313 results
(View BibTeX file of all listed publications)

**mGene: accurate SVM-based gene finding with an application to nematode genomes**
*Genome Research*, 19(11):2133-43, 2009 (article)

**Efficient Bregman Range Search**
In *Advances in Neural Information Processing Systems 22*, pages: 243-251, (Editors: Bengio, Y. , D. Schuurmans, J. Lafferty, C. Williams, A. Culotta), Curran, Red Hook, NY, USA, 23rd Annual Conference on Neural Information Processing Systems (NIPS), 2009 (inproceedings)

**Structure and activity of the N-terminal substrate recognition domains in proteasomal ATPases**
*Molecular Cell*, 34(5):580-590, 2009 (article)

**Discussion of: Brownian Distance Covariance**
*The Annals of Applied Statistics*, 3(4):1285-1294, 2009 (article)

**Kernel Choice and Classifiability for RKHS Embeddings of Probability Distributions**
In *Advances in Neural Information Processing Systems 22*, pages: 1750-1758, (Editors: Y Bengio and D Schuurmans and J Lafferty and C Williams and A Culotta), Curran, Red Hook, NY, USA, 23rd Annual Conference on Neural Information Processing Systems (NIPS), 2009 (inproceedings)

**Nonlinear directed acyclic structure learning with weakly additive noise models**
In *Advances in Neural Information Processing Systems 22*, pages: 1847-1855, (Editors: Bengio, Y. , D. Schuurmans, J. Lafferty, C. Williams, A. Culotta), Curran, Red Hook, NY, USA, 23rd Annual Conference on Neural Information Processing Systems (NIPS), 2009 (inproceedings)

**Graphical models for decoding in BCI visual speller systems**
In pages: 470-473, IEEE, 4th International IEEE EMBS Conference on Neural Engineering (NER), 2009 (inproceedings)

**A Fast, Consistent Kernel Two-Sample Test**
In *Advances in Neural Information Processing Systems 22*, pages: 673-681, (Editors: Bengio, Y. , D. Schuurmans, J. Lafferty, C. Williams, A. Culotta), Curran, Red Hook, NY, USA, 23rd Annual Conference on Neural Information Processing Systems (NIPS), 2009 (inproceedings)

**Augmenting Feature-driven fMRI Analyses: Semi-supervised learning and resting state activity**
In *Advances in Neural Information Processing Systems 22*, pages: 126-134, (Editors: Bengio, Y. , D. Schuurmans, J. Lafferty, C. Williams, A. Culotta), Curran, Red Hook, NY, USA, 23rd Annual Conference on Neural Information Processing Systems (NIPS), 2009 (inproceedings)

**Non-linear System Identification: Visual Saliency Inferred from Eye-Movement Data**
*Journal of Vision*, 9(8):article 32, 2009 (article)

**mGene.web: a web service for accurate computational gene finding**
*Nucleic Acids Research*, 37, pages: W312-6, 2009 (article)

**Fast subtree kernels on graphs**
In *Advances in Neural Information Processing Systems 22*, pages: 1660-1668, (Editors: Bengio, Y. , D. Schuurmans, J. Lafferty, C. Williams, A. Culotta), Curran, Red Hook, NY, USA, 23rd Annual Conference on Neural Information Processing Systems (NIPS), 2009 (inproceedings)

**Reaction graph kernels for discovering missing enzymes in the plant secondary metabolism**
NIPS Workshop on Machine Learning in Computational Biology, December 2007 (talk)

**Positional Oligomer Importance Matrices**
NIPS Workshop on Machine Learning in Computational Biology, December 2007 (talk)

**Machine Learning Algorithms for Polymorphism Detection**
NIPS Workshop on Machine Learning in Computational Biology, December 2007 (talk)

**A Tutorial on Spectral Clustering**
*Statistics and Computing*, 17(4):395-416, December 2007 (article)

**An Automated Combination of Kernels for Predicting Protein Subcellular Localization**
NIPS Workshop on Machine Learning in Computational Biology, December 2007 (talk)

**A Tutorial on Kernel Methods for Categorization**
*Journal of Mathematical Psychology*, 51(6):343-358, December 2007 (article)

**Accurate Splice site Prediction Using Support Vector Machines**
*BMC Bioinformatics*, 8(Supplement 10):1-16, December 2007 (article)

**Challenges in Brain-Computer Interface Development: Induction, Measurement, Decoding, Integration**
Invited keynote talk at the launch of BrainGain, the Dutch BCI research consortium, November 2007 (talk)

**Towards compliant humanoids: an experimental assessment of suitable task space position/orientation controllers**
In *IROS 2007*, 2007, pages: 2520-2527, (Editors: Grant, E. , T. C. Henderson), IEEE Service Center, Piscataway, NJ, USA, IEEE/RSJ International Conference on Intelligent Robots and Systems, November 2007 (inproceedings)

**Experimental design for efficient identification of gene regulatory networks using sparse Bayesian models**
*BMC Systems Biology*, 1(51):1-15, November 2007 (article)

**Performance Stabilization and Improvement in Graph-based Semi-supervised Learning with
Ensemble Method and Graph Sharpening**
In *Korean Data Mining Society Conference*, pages: 257-262, Korean Data Mining Society, Seoul, Korea, Korean Data Mining Society Conference, November 2007 (inproceedings)

**Policy Learning for Robotics**
14th International Conference on Neural Information Processing (ICONIP), November 2007 (talk)

**A unifying framework for robot control with redundant DOFs**
*Autonomous Robots*, 24(1):1-12, October 2007 (article)

**The Need for Open Source Software in Machine Learning**
*Journal of Machine Learning Research*, 8, pages: 2443-2466, October 2007 (article)

**Hilbert Space Representations of Probability Distributions**
2nd Workshop on Machine Learning and Optimization at the ISM, October 2007 (talk)

**Discriminative Subsequence Mining for Action Classification**
In *ICCV 2007*, pages: 1919-1923, IEEE Computer Society, Los Alamitos, CA, USA, 11th IEEE International Conference on Computer Vision, October 2007 (inproceedings)

**Regression with Intervals**
International Workshop on Data-Mining and Statistical Science (DMSS2007), October 2007, JSAI Incentive Award. Talk was given by Hisashi Kashima. (talk)

**Some observations on the masking effects of Mach bands**
*Journal of the Optical Society of America A*, 24(10):3233-3241, October 2007 (article)

**A Hilbert Space Embedding for Distributions**
In *Algorithmic Learning Theory, Lecture Notes in Computer Science 4754 *, pages: 13-31, (Editors: M Hutter and RA Servedio and E Takimoto), Springer, Berlin, Germany, 18th International Conference on Algorithmic Learning Theory (ALT), October 2007 (inproceedings)

**Cluster Identification in Nearest-Neighbor Graphs**
In *ALT 2007*, pages: 196-210, (Editors: Hutter, M. , R. A. Servedio, E. Takimoto), Springer, Berlin, Germany, 18th International Conference on Algorithmic Learning Theory, October 2007 (inproceedings)

**Inducing Metric Violations in Human Similarity Judgements**
In *Advances in Neural Information Processing Systems 19*, pages: 777-784, (Editors: Schölkopf, B. , J. Platt, T. Hofmann), MIT Press, Cambridge, MA, USA, Twentieth Annual Conference on Neural Information Processing Systems (NIPS), September 2007 (inproceedings)

**Cross-Validation Optimization for Large Scale Hierarchical
Classification Kernel Methods**
In *Advances in Neural Information Processing Systems 19*, pages: 1233-1240, (Editors: Schölkopf, B. , J. Platt, T. Hofmann), MIT Press, Cambridge, MA, USA, Twentieth Annual Conference on Neural Information Processing Systems (NIPS), September 2007 (inproceedings)

**A Local Learning Approach for Clustering**
In *Advances in Neural Information Processing Systems 19*, pages: 1529-1536, (Editors: B Schölkopf and J Platt and T Hofmann), MIT Press, Cambridge, MA, USA, 20th Annual Conference on Neural Information Processing Systems (NIPS), September 2007 (inproceedings)

**MR-Based PET Attenuation Correction: Method and Validation**
Joint Molecular Imaging Conference, September 2007 (talk)

**Mining complex genotypic features
for predicting HIV-1 drug resistance**
*Bioinformatics*, 23(18):2455-2462, September 2007 (article)

**Branch and Bound for Semi-Supervised Support Vector Machines**
In *Advances in Neural Information Processing Systems 19*, pages: 217-224, (Editors: Schölkopf, B. , J. Platt, T. Hofmann), MIT Press, Cambridge, MA, USA, Twentieth Annual Conference on Neural Information Processing Systems (NIPS), September 2007 (inproceedings)

**A Kernel Method for the Two-Sample-Problem**
In *Advances in Neural Information Processing Systems 19*, pages: 513-520, (Editors: B Schölkopf and J Platt and T Hofmann), MIT Press, Cambridge, MA, USA, 20th Annual Conference on Neural Information Processing Systems (NIPS), September 2007 (inproceedings)

**An Efficient Method for Gradient-Based Adaptation of Hyperparameters in SVM Models**
In *Advances in Neural Information Processing Systems 19*, pages: 673-680, (Editors: Schölkopf, B. , J. Platt, T. Hofmann), MIT Press, Cambridge, MA, USA, Twentieth Annual Conference on Neural Information Processing Systems (NIPS), September 2007 (inproceedings)

**Learning Dense 3D Correspondence**
In *Advances in Neural Information Processing Systems 19*, pages: 1313-1320, (Editors: B Schölkopf and J Platt and T Hofmann), MIT Press, Cambridge, MA, USA, 20th Annual Conference on Neural Information Processing Systems (NIPS), September 2007 (inproceedings)

**Optimal Dominant Motion Estimation using Adaptive Search of Transformation Space**
In *DAGM 2007*, pages: 204-215, (Editors: Hamprecht, F. A., C. Schnörr, B. Jähne), Springer, Berlin, Germany, 29th Annual Symposium of the German Association for Pattern Recognition, September 2007 (inproceedings)

**Output Grouping using Dirichlet Mixtures of Linear Gaussian State-Space Models**
In *ISPA 2007*, pages: 446-451, IEEE Computer Society, Los Alamitos, CA, USA, 5th International Symposium on Image and Signal Processing and Analysis, September 2007 (inproceedings)

**Manifold Denoising**
In *Advances in Neural Information Processing Systems 19*, pages: 561-568, (Editors: Schölkopf, B. , J. Platt, T. Hofmann), MIT Press, Cambridge, MA, USA, Twentieth Annual Conference on Neural Information Processing Systems (NIPS), September 2007 (inproceedings)

**How to Find Interesting Locations in Video: A Spatiotemporal Interest Point Detector Learned from Human Eye movements**
In *Pattern Recognition*, pages: 405-414, (Editors: FA Hamprecht and C Schnörr and B Jähne), Springer, Berlin, Germany, 29th Annual Symposium of the German Association for Pattern Recognition (DAGM), September 2007 (inproceedings)

**Bayesian Inference for Sparse Generalized Linear Models**
In *ECML 2007*, pages: 298-309, Lecture Notes in Computer Science ; 4701, (Editors: Kok, J. N., J. Koronacki, R. Lopez de Mantaras, S. Matwin, D. Mladenic, A. Skowron), Springer, Berlin, Germany, 18th European Conference on Machine Learning, September 2007 (inproceedings)

**Implicit Surfaces with Globally Regularised and Compactly Supported Basis Functions**
In *Advances in Neural Information Processing Systems 19*, pages: 273-280, (Editors: B Schölkopf and J Platt and T Hofmann), MIT Press, Cambridge, MA, USA, 20th Annual Conference on Neural Information Processing Systems (NIPS), September 2007 (inproceedings)

**Bayesian methods for NMR structure determination**
29th Annual Discussion Meeting: Magnetic Resonance in Biophysical Chemistry, September 2007 (talk)

**Real-Time Fetal Heart Monitoring in Biomagnetic Measurements Using Adaptive Real-Time ICA**
*IEEE Transactions on Biomedical Engineering*, 54(10):1867-1874, September 2007 (article)

**A Nonparametric Approach to Bottom-Up Visual Saliency**
In *Advances in Neural Information Processing Systems 19*, pages: 689-696, (Editors: B Schölkopf and J Platt and T Hofmann), MIT Press, Cambridge, MA, USA, 20th Annual Conference on Neural Information Processing Systems (NIPS), September 2007 (inproceedings)