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2004


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Existence of transient temperature spike induced by SHI: evidence by ion beam analysis

Avasthi, D. K., Ghosh, S., Srivastava, S. K., Assmann, W.

In 219-220, pages: 206-214, Albuquerque, NM [USA], 2004 (inproceedings)

mms

[BibTex]

2004


[BibTex]


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Core-shell iron-iron oxide nanoparticles: magnetic properties and interactions

Theil-Kuhn, L., Bojesen, A., Timmermann, L., Fauth, K., Goering, E. J., Johnson, E., Meedom Nielsen, M., Morup, S.

{Journal of Magnetism and Magnetic Materials}, 272-276, pages: 1485-1486, 2004 (article)

mms

[BibTex]

[BibTex]


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Measurement of very low bulk concentrations (below 1 atppm) of hydrogen using ERDA

Tripathi, A., Kruse, O., Carstanjen, H. D.

{Nuclear Instruments and Methods B}, 219-220, pages: 435-439, 2004 (article)

mms

[BibTex]

[BibTex]


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Three-dimensional nanoscale manipulation and manufacturing using proximal probes: controlled pulling of polymer micro/nanofibers

Nain, A. S., Amon, C., Sitti, M.

In Mechatronics, 2004. ICM’04. Proceedings of the IEEE International Conference on, pages: 224-230, 2004 (inproceedings)

pi

[BibTex]

[BibTex]


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Unusual doublet structure in proton magnetic-resonance spectra of yttrium and lutetium trihydrides

Majer, G., Telfah, A., Grinberg, F., Barnes, R. G.

{Physical Review B}, 70(13), 2004 (article)

mms

[BibTex]

[BibTex]


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Kinetics of primary nanocrystallization in Al-rich metallic glass with quenched-in nuclei

Wang, J. Q., Zhang, H. W., Gu, X. J., Lu, K., Sommer, F., Mittemeijer, E.

{Materials Science and Engineering A}, 375-377, pages: 980-984, 2004 (article)

mms

[BibTex]

[BibTex]


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3-dimensional Wulff diagrams for \Sigma3 grain boundaries in Cu

Straumal, B., Kucherinenko, Y., Baretzky, B.

{Reviews on Advanced Materials Science}, 7(1):23-31, 2004 (article)

mms

[BibTex]

[BibTex]


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First-principles study of the interplay between magnetism and phase equilibria in Fe-Co systems

Diaz-Ortiz, A., Drautz, R., Fähnle, M., Dosch, H.

{Journal of Magnetism and Magnetic Materials}, 272-276, pages: 780-782, 2004 (article)

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[BibTex]

[BibTex]


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Magnetic field optimization of permanent magnet unulators for arbitrary polarization

Bahrdt, J., Frentrup, W., Gaupp, A., Scheer, M., Englisch, U.

{Nuclear Instruments and Methods in Physics Research A}, 516, pages: 575-585, 2004 (article)

mms

[BibTex]

[BibTex]


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High-resolution imaging of fast magnetization dynamics in magnetic nanostructures

Stoll, H., Puzic, A., Van Waeyenberge, B., Fischer, P., Raabe, J., Buess, M., Haug, T., Höllinger, R., Back, C., Weiss, D., Denbeaux, G.

{Applied Physics Letters}, 84, pages: 3328-3330, 2004 (article)

mms

[BibTex]

[BibTex]


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Comparison of low-temperature magnetic relaxations in two systems GdAl2Dx (C15 Laves phase) and Fe3O4 (Inverse spinel)

Walz, F., Reule, H., Hirscher, M., Kronmüller, H.

{Physica Status Solidi B}, 241(2):389-400, 2004 (article)

mms

[BibTex]

[BibTex]


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General relations between many-body potentials and cluster expansions in multi-component systems

Drautz, R., Fähnle, M., Sanchez, J.M.

{Journal of Physics: Condensed Matter}, 16, pages: 3843-3852, 2004 (article)

mms

[BibTex]

[BibTex]


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Counting individual atom layers in graphite - high-resolution RBS experiments on HOPG (highly ordered pyrolytic graphite)

Srivastava, S. K., Plachke, D., Szökefalvi-Nagy, A., Major, J., Carstanjen, H. D.

{Nuclear Instruments and Methods B}, 219-220, pages: 364-368, 2004 (article)

Abstract
{The paper reports about recent experiments on HOPG (highly oriented pyrolytic graphite) by high-resolution RBS (Rutherford backscattering spectroscopy). By using an ion beam of 1 MeV N+ up to 7 individual monolayers could be identified in the RBS spectrum from such a sample. This is about twice as much as observed by other groups up to now. Since close to the surface the RBS peaks from the individual carbon layers are well separated, various quantities important for the ion-solid interaction can be determined with high precision, such as the stopping power of 1 MeV N ions in graphite and their energy straggling. Close to the surface the RBS peaks are asymmetric which is well explained in the framework of the Landau theory of energy straggling.}

mms

[BibTex]

[BibTex]


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Feedback error learning and nonlinear adaptive control

Nakanishi, J., Schaal, S.

Neural Networks, 17(10):1453-1465, 2004, clmc (article)

Abstract
In this paper, we present our theoretical investigations of the technique of feedback error learning (FEL) from the viewpoint of adaptive control. We first discuss the relationship between FEL and nonlinear adaptive control with adaptive feedback linearization, and show that FEL can be interpreted as a form of nonlinear adaptive control. Second, we present a Lyapunov analysis suggesting that the condition of strictly positive realness (SPR) associated with the tracking error dynamics is a sufficient condition for asymptotic stability of the closed-loop dynamics. Specifically, for a class of second order SISO systems, we show that this condition reduces to KD^2 > KP; where KP and KD are positive position and velocity feedback gains, respectively. Moreover, we provide a ÔpassivityÕ-based stability analysis which suggests that SPR of the tracking error dynamics is a necessary and sufficient condition for asymptotic hyperstability. Thus, the condition KD^2>KP mentioned above is not only a sufficient but also necessary condition to guarantee asymptotic hyperstability of FEL, i.e. the tracking error is bounded and asymptotically converges to zero. As a further point, we explore the adaptive control and FEL framework for feedforward control formulations, and derive an additional sufficient condition for asymptotic stability in the sense of Lyapunov. Finally, we present numerical simulations to illustrate the stability properties of FEL obtained from our mathematical analysis.

am

link (url) [BibTex]

link (url) [BibTex]


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Micro-and nano-scale robotics

Sitti, M.

In American Control Conference, 2004. Proceedings of the 2004, 1, pages: 1-8, 2004 (inproceedings)

pi

[BibTex]

[BibTex]


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Gecko inspired surface climbing robots

Menon, C., Murphy, M., Sitti, M.

In Robotics and Biomimetics, 2004. ROBIO 2004. IEEE International Conference on, pages: 431-436, 2004 (inproceedings)

pi

Project Page [BibTex]

Project Page [BibTex]


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Micromagnetism and the microstructure of high-temperature permanent magnets

Goll, D., Kronmüller, H., Stadelmaier, H. H.

{Journal of Applied Physics}, 96(11):6534-6545, 2004 (article)

mms

[BibTex]

[BibTex]


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Atomic defects and diffusion in intermetallic compounds with DO3 structure: An ab-initio study

Fähnle, M., Schimmele, L.

{Zeitschrift f\"ur Metallkunde}, 95, pages: 864-869, 2004 (article)

mms

[BibTex]

[BibTex]


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Cluster surface interactions: Small Fe clusters driven nonmagnetic on graphite

Fauth, K., Gold, S., He\ssler, M., Schütz, G.

{Chemical Physics Letters}, 392(4-6):498-502, 2004 (article)

mms

DOI [BibTex]

DOI [BibTex]


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\textquotesingleWetting by solid state’grain boundary phase transition in Zn-Al alloys

Straumal, B. B., Khruzhcheva, A. S., Lopez, G. A.

{Reviews on Advanced Materials Science}, 7(1):13-22, 2004 (article)

mms

[BibTex]

[BibTex]


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Two prototypes of metal adatom configurations on Mo(112): an ab initio study for Li and Co

Singer, R., Drautz, R., Fähnle, M.

{Surface Science}, 559, pages: 241-248, 2004 (article)

mms

[BibTex]

[BibTex]


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Grain boundary phase transitions and their influence on properties of polycrystals

Straumal, B., Baretzky, B.

{Interface Science}, 12(2-3):147-155, 2004 (article)

mms

[BibTex]

[BibTex]


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Hard magnetic hollow nanospheres

Goll, D., Berkowitz, A. E., Bertram, H. N.

In Proceedings of the 18th International Workshop on Rare-Earth Magnets and their Applications, pages: 704-707, Laboratoire de Cristallographie/Laboratoire Louis Neel, CNRS, Grenoble, 2004 (inproceedings)

mms

[BibTex]

[BibTex]


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Swift heavy ion induced modification of Si/C60 multilayers

Srivastava, S. K., Kabiraj, D., Schattat, B., Carstanjen, H. D., Avasthi, D. K.

{Nuclear Instruments and Methods in Physics Research B}, 219 - 220, pages: 815-819, 2004 (article)

mms

[BibTex]

[BibTex]


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Static displacements of Pd in the solid solution PdBy (0\textlessy\textless0.2) as determined by neutron diffraction

Berger, T. G., Leineweber, A., Mittemeijer, E. J., Fischer, P.

{Physica Status Solidi (A)}, 201, pages: 1484-1492, 2004 (article)

mms

[BibTex]

[BibTex]


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X-MCD magnetometry of CMR perovskites La0.67-yREyCa0.33MnO3

Sikora, M., Kapusta, C., Zajac, D., Tokarz, W., Oates, C. J., Borowiec, M., Rybicki, D., Goering, E. J., Fischer, P., Schütz, G., De Teresa, J. M., Ibarra, M. R.

{Journal of Magnetism and Magnetic Materials}, 272-276, pages: 2148-2150, 2004 (article)

mms

[BibTex]

[BibTex]


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Critical thicknesses of domain formations in cubic particles and thin films

Kronmüller, H., Goll, D., Hertel, R., Schütz, G.

{Physica B}, 343(1-4):229-235, 2004 (article)

mms

[BibTex]

[BibTex]


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A direct brain-machine interface for 2D cursor control using a Kalman filter

Shaikhouni, A., Wu, W., Moris, D. S., Donoghue, J. P., Black, M. J.

Society for Neuroscience, 2004, Online (conference)

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abstract [BibTex]

abstract [BibTex]

2003


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Molecular phenotyping of human chondrocyte cell lines T/C-28a2, T/C-28a4, and C-28/I2

Finger, F., Schorle, C., Zien, A., Gebhard, P., Goldring, M., Aigner, T.

Arthritis & Rheumatism, 48(12):3395-3403, December 2003 (article)

ei

[BibTex]

2003


[BibTex]


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A Study on Rainfall - Runoff Models for Improving Ensemble Streamflow Prediction: 1. Rainfallrunoff Models Using Artificial Neural Networks

Jeong, D., Kim, Y., Cho, S., Shin, H.

Journal of the Korean Society of Civil Engineers, 23(6B):521-530, December 2003 (article)

Abstract
The previous ESP (Ensemble Streamflow Prediction) studies conducted in Korea reported that the modeling error is a major source of the ESP forecast error in winter and spring (i.e. dry seasons), and thus suggested that improving the rainfall-runoff model would be critical to obtain more accurate probabilistic forecasts with ESP. This study used two types of Artificial Neural Networks (ANN), such as a Single Neural Network (SNN) and an Ensemble Neural Networks (ENN), to improve the simulation capability of the rainfall-runoff model of the ESP forecasting system for the monthly inflow to the Daecheong dam. Applied for the first time to Korean hydrology, ENN combines the outputs of member models so that it can control the generalization error better than SNN. Because the dry and the flood season in Korea shows considerably different streamflow characteristics, this study calibrated the rainfall-runoff model separately for each season. Therefore, four rainfall-runoff models were developed according to the ANN types and the seasons. This study compared the ANN models with a conceptual rainfall-runoff model called TANK and verified that the ANN models were superior to TANK. Among the ANN models, ENN was more accurate than SNN. The ANN model performance was improved when the model was calibrated separately for the dry and the flood season. The best ANN model developed in this article will be incorporated into the ESP system to increase the forecast capability of ESP for the monthly inflow to the Daecheong dam.

ei

[BibTex]

[BibTex]


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Quantitative Cerebral Blood Flow Measurements in the Rat Using a Beta-Probe and H215O

Weber, B., Spaeth, N., Wyss, M., Wild, D., Burger, C., Stanley, R., Buck, A.

Journal of Cerebral Blood Flow and Metabolism, 23(12):1455-1460, December 2003 (article)

Abstract
Beta-probes are a relatively new tool for tracer kinetic studies in animals. They are highly suited to evaluate new positron emission tomography tracers or measure physiologic parameters at rest and after some kind of stimulation or intervention. In many of these experiments, the knowledge of CBF is highly important. Thus, the purpose of this study was to evaluate the method of CBF measurements using a beta-probe and H215O. CBF was measured in the barrel cortex of eight rats at baseline and after acetazolamide challenge. Trigeminal nerve stimulation was additionally performed in five animals. In each category, three injections of 250 to 300 MBq H215O were performed at 10-minute intervals. Data were analyzed using a standard one-tissue compartment model (K1 = CBF, k2 = CBF/p, where p is the partition coefficient). Values for K1 were 0.35 plusminus 0.09, 0.58 plusminus 0.16, and 0.49 plusminus 0.03 mL dot min-1 dot mL-1 at rest, after acetazolamide challenge, and during trigeminal nerve stimulation, respectively. The corresponding values for k2 were 0.55 plusminus 0.12, 0.94 plusminus 0.16, and 0.85 plusminus 0.12 min-7, and for p were 0.64 plusminus 0.05, 0.61 plusminus 0.07, and 0.59 plusminus 0.06.The standard deviation of the difference between two successive experiments, a measure for the reproducibility of the method, was 10.1%, 13.0%, and 5.7% for K1, k2, and p, respectively. In summary, beta-probes in conjunction with H215O allow the reproducible quantitative measurement of CBF, although some systematic underestimation seems to occur, probably because of partial volume effects.

ei

PDF DOI [BibTex]

PDF DOI [BibTex]


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How to Deal with Large Dataset, Class Imbalance and Binary Output in SVM based Response Model

Shin, H., Cho, S.

In Proc. of the Korean Data Mining Conference, pages: 93-107, Korean Data Mining Conference, December 2003, Best Paper Award (inproceedings)

Abstract
[Abstract]: Various machine learning methods have made a rapid transition to response modeling in search of improved performance. And support vector machine (SVM) has also been attracting much attention lately. This paper presents an SVM response model. We are specifically focusing on the how-to’s to circumvent practical obstacles, such as how to face with class imbalance problem, how to produce the scores from an SVM classifier for lift chart analysis, and how to evaluate the models on accuracy and profit. Besides coping with the intractability problem of SVM training caused by large marketing dataset, a previously proposed pattern selection algorithm is introduced. SVM training accompanies time complexity of the cube of training set size. The pattern selection algorithm picks up important training patterns before SVM response modeling. We made comparison on SVM training results between the pattern selection algorithm and random sampling. Three aspects of SVM response models were evaluated: accuracies, lift chart analysis, and computational efficiency. The SVM trained with selected patterns showed a high accuracy, a high uplift in profit and in response rate, and a high computational efficiency.

ei

PDF [BibTex]

PDF [BibTex]


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Blind separation of post-nonlinear mixtures using linearizing transformations and temporal decorrelation

Ziehe, A., Kawanabe, M., Harmeling, S., Müller, K.

Journal of Machine Learning Research, 4(7-8):1319-1338, November 2003 (article)

Abstract
We propose two methods that reduce the post-nonlinear blind source separation problem (PNL-BSS) to a linear BSS problem. The first method is based on the concept of maximal correlation: we apply the alternating conditional expectation (ACE) algorithm--a powerful technique from non-parametric statistics--to approximately invert the componentwise nonlinear functions. The second method is a Gaussianizing transformation, which is motivated by the fact that linearly mixed signals before nonlinear transformation are approximately Gaussian distributed. This heuristic, but simple and efficient procedure works as good as the ACE method. Using the framework provided by ACE, convergence can be proven. The optimal transformations obtained by ACE coincide with the sought-after inverse functions of the nonlinearities. After equalizing the nonlinearities, temporal decorrelation separation (TDSEP) allows us to recover the source signals. Numerical simulations testing "ACE-TD" and "Gauss-TD" on realistic examples are performed with excellent results.

ei

PDF PDF DOI [BibTex]

PDF PDF DOI [BibTex]


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Correlated stage- and subfield-associated hippocampal gene expression patterns in experimental and human temporal lobe epilepsy

Becker, A., Chen, J., Zien, A., Sochivko, D., Normann, S., Schramm, J., Elger, C., Wiestler, O., Blumcke, I.

European Journal of Neuroscience, 18(10):2792-2802, November 2003 (article)

Abstract
Epileptic activity evokes profound alterations of hippocampal organization and function. Genomic responses may reflect immediate consequences of excitatory stimulation as well as sustained molecular processes related to neuronal plasticity and structural remodeling. Using oligonucleotide microarrays with 8799 sequences, we determined subregional gene expression profiles in rats subjected to pilocarpine-induced epilepsy (U34A arrays, Affymetrix, Santa Clara, CA, USA; P < 0.05, twofold change, n = 3 per stage). Patterns of gene expression corresponded to distinct stages of epilepsy development. The highest number of differentially expressed genes (dentate gyrus, approx. 400 genes and CA1, approx. 700 genes) was observed 3 days after status epilepticus. The majority of up-regulated genes was associated with mechanisms of cellular stress and injury - 14 days after status epilepticus, numerous transcription factors and genes linked to cytoskeletal and synaptic reorganization were differentially expressed and, in the stage of chronic spontaneous seizures, distinct changes were observed in the transcription of genes involved in various neurotransmission pathways and between animals with low vs. high seizure frequency. A number of genes (n = 18) differentially expressed during the chronic epileptic stage showed corresponding expression patterns in hippocampal subfields of patients with pharmacoresistant temporal lobe epilepsy (n = 5 temporal lobe epilepsy patients; U133A microarrays, Affymetrix; covering 22284 human sequences). These data provide novel insights into the molecular mechanisms of epileptogenesis and seizure-associated cellular and structural remodeling of the hippocampus.

ei

[BibTex]

[BibTex]


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Concentration Inequalities for Sub-Additive Functions Using the Entropy Method

Bousquet, O.

Stochastic Inequalities and Applications, 56, pages: 213-247, Progress in Probability, (Editors: Giné, E., C. Houdré and D. Nualart), November 2003 (article)

Abstract
We obtain exponential concentration inequalities for sub-additive functions of independent random variables under weak conditions on the increments of those functions, like the existence of exponential moments for these increments. As a consequence of these general inequalities, we obtain refinements of Talagrand's inequality for empirical processes and new bounds for randomized empirical processes. These results are obtained by further developing the entropy method introduced by Ledoux.

ei

PostScript [BibTex]

PostScript [BibTex]


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Characterizing the Human Wrist for Improved Haptic Interaction

Kuchenbecker, K. J., Park, J. G., Niemeyer, G.

In Proc. ASME International Mechanical Engineering Congress and Exposition, Symposium on Advances in Robot Dynamics and Control, 2, paper number 42017, Washington, D.C., USA, November 2003, Oral presentation given by Kuchenbecker (inproceedings)

hi

[BibTex]

[BibTex]


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Bayesian Monte Carlo

Rasmussen, CE., Ghahramani, Z.

In Advances in Neural Information Processing Systems 15, pages: 489-496, (Editors: Becker, S. , S. Thrun, K. Obermayer), MIT Press, Cambridge, MA, USA, Sixteenth Annual Conference on Neural Information Processing Systems (NIPS), October 2003 (inproceedings)

Abstract
We investigate Bayesian alternatives to classical Monte Carlo methods for evaluating integrals. Bayesian Monte Carlo (BMC) allows the incorporation of prior knowledge, such as smoothness of the integrand, into the estimation. In a simple problem we show that this outperforms any classical importance sampling method. We also attempt more challenging multidimensional integrals involved in computing marginal likelihoods of statistical models (a.k.a. partition functions and model evidences). We find that Bayesian Monte Carlo outperformed Annealed Importance Sampling, although for very high dimensional problems or problems with massive multimodality BMC may be less adequate. One advantage of the Bayesian approach to Monte Carlo is that samples can be drawn from any distribution. This allows for the possibility of active design of sample points so as to maximise information gain.

ei

PDF Web [BibTex]

PDF Web [BibTex]


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On the Complexity of Learning the Kernel Matrix

Bousquet, O., Herrmann, D.

In Advances in Neural Information Processing Systems 15, pages: 399-406, (Editors: Becker, S. , S. Thrun, K. Obermayer), The MIT Press, Cambridge, MA, USA, Sixteenth Annual Conference on Neural Information Processing Systems (NIPS), October 2003 (inproceedings)

Abstract
We investigate data based procedures for selecting the kernel when learning with Support Vector Machines. We provide generalization error bounds by estimating the Rademacher complexities of the corresponding function classes. In particular we obtain a complexity bound for function classes induced by kernels with given eigenvectors, i.e., we allow to vary the spectrum and keep the eigenvectors fix. This bound is only a logarithmic factor bigger than the complexity of the function class induced by a single kernel. However, optimizing the margin over such classes leads to overfitting. We thus propose a suitable way of constraining the class. We use an efficient algorithm to solve the resulting optimization problem, present preliminary experimental results, and compare them to an alignment-based approach.

ei

PDF Web [BibTex]

PDF Web [BibTex]


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Control, Planning, Learning, and Imitation with Dynamic Movement Primitives

Schaal, S., Peters, J., Nakanishi, J., Ijspeert, A.

In IROS 2003, pages: 1-21, Workshop on Bilateral Paradigms on Humans and Humanoids, IEEE International Conference on Intelligent Robots and Systems, October 2003 (inproceedings)

ei

PDF [BibTex]

PDF [BibTex]


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Discriminative Learning for Label Sequences via Boosting

Altun, Y., Hofmann, T., Johnson, M.

In Advances in Neural Information Processing Systems 15, pages: 977-984, (Editors: Becker, S. , S. Thrun, K. Obermayer ), MIT Press, Cambridge, MA, USA, Sixteenth Annual Conference on Neural Information Processing Systems (NIPS), October 2003 (inproceedings)

Abstract
This paper investigates a boosting approach to discriminative learning of label sequences based on a sequence rank loss function.

ei

PDF Web [BibTex]

PDF Web [BibTex]


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Multiple-step ahead prediction for non linear dynamic systems: A Gaussian Process treatment with propagation of the uncertainty

Girard, A., Rasmussen, CE., Quiñonero-Candela, J., Murray-Smith, R.

In Advances in Neural Information Processing Systems 15, pages: 529-536, (Editors: Becker, S. , S. Thrun, K. Obermayer), MIT Press, Cambridge, MA, USA, Sixteenth Annual Conference on Neural Information Processing Systems (NIPS), October 2003 (inproceedings)

Abstract
We consider the problem of multi-step ahead prediction in time series analysis using the non-parametric Gaussian process model. k-step ahead forecasting of a discrete-time non-linear dynamic system can be performed by doing repeated one-step ahead predictions. For a state-space model of the form y_t = f(y_{t-1},...,y_{t-L}), the prediction of y at time t + k is based on the point estimates of the previous outputs. In this paper, we show how, using an analytical Gaussian approximation, we can formally incorporate the uncertainty about intermediate regressor values, thus updating the uncertainty on the current prediction.

ei

PDF Web [BibTex]

PDF Web [BibTex]


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Cluster Kernels for Semi-Supervised Learning

Chapelle, O., Weston, J., Schölkopf, B.

In Advances in Neural Information Processing Systems 15, pages: 585-592, (Editors: S Becker and S Thrun and K Obermayer), MIT Press, Cambridge, MA, USA, 16th Annual Conference on Neural Information Processing Systems (NIPS), October 2003 (inproceedings)

Abstract
We propose a framework to incorporate unlabeled data in kernel classifier, based on the idea that two points in the same cluster are more likely to have the same label. This is achieved by modifying the eigenspectrum of the kernel matrix. Experimental results assess the validity of this approach.

ei

PDF Web [BibTex]

PDF Web [BibTex]


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Mismatch String Kernels for SVM Protein Classification

Leslie, C., Eskin, E., Weston, J., Noble, W.

In Advances in Neural Information Processing Systems 15, pages: 1417-1424, (Editors: Becker, S. , S. Thrun, K. Obermayer), MIT Press, Cambridge, MA, USA, Sixteenth Annual Conference on Neural Information Processing Systems (NIPS), October 2003 (inproceedings)

Abstract
We introduce a class of string kernels, called mismatch kernels, for use with support vector machines (SVMs) in a discriminative approach to the protein classification problem. These kernels measure sequence similarity based on shared occurrences of k-length subsequences, counted with up to m mismatches, and do not rely on any generative model for the positive training sequences. We compute the kernels efficiently using a mismatch tree data structure and report experiments on a benchmark SCOP dataset, where we show that the mismatch kernel used with an SVM classifier performs as well as the Fisher kernel, the most successful method for remote homology detection, while achieving considerable computational savings.

ei

PDF Web [BibTex]

PDF Web [BibTex]


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YKL-39 (chitinase 3-like protein 2), but not YKL-40 (chitinase 3-like protein 1), is up regulated in osteoarthritic chondrocytes

Knorr, T., Obermayr, F., Bartnik, E., Zien, A., Aigner, T.

Annals of the Rheumatic Diseases, 62(10):995-998, October 2003 (article)

Abstract
OBJECTIVE: To investigate quantitatively the mRNA expression levels of YKL-40, an established marker of rheumatoid and osteoarthritic cartilage degeneration in synovial fluid and serum, and a closely related molecule YKL-39, in articular chondrocytes. METHODS: cDNA array and online quantitative polymerase chain reaction (PCR) were used to measure mRNA expression levels of YKL-39 and YKL-40 in chondrocytes in normal, early degenerative, and late stage osteoarthritic cartilage samples. RESULTS: Expression analysis showed high levels of both proteins in normal articular chondrocytes, with lower levels of YKL-39 than YKL-40. Whereas YKL-40 was significantly down regulated in late stage osteoarthritic chondrocytes, YKL-39 was significantly up regulated. In vitro both YKLs were down regulated by interleukin 1beta. CONCLUSIONS: The up regulation of YKL-39 in osteoarthritic cartilage suggests that YKL-39 may be a more accurate marker of chondrocyte activation than YKL-40, although it has yet to be established as a suitable marker in synovial fluid and serum. The decreased expression of YKL-40 by osteoarthritic chondrocytes is surprising as increased levels have been reported in rheumatoid and osteoarthritic synovial fluid, where it may derive from activated synovial cells or osteophytic tissue or by increased matrix destruction in the osteoarthritic joint. YKL-39 and YKL-40 are potentially interesting marker molecules for arthritic joint disease because they are abundantly expressed by both normal and osteoarthritic chondrocytes.

ei

[BibTex]

[BibTex]


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Incremental Gaussian Processes

Quinonero Candela, J., Winther, O.

In Advances in Neural Information Processing Systems 15, pages: 1001-1008, (Editors: Becker, S. , S. Thrun, K. Obermayer), MIT Press, Cambridge, MA, USA, Sixteenth Annual Conference on Neural Information Processing Systems (NIPS), October 2003 (inproceedings)

Abstract
In this paper, we consider Tipping‘s relevance vector machine (RVM) and formalize an incremental training strategy as a variant of the expectation-maximization (EM) algorithm that we call subspace EM. Working with a subset of active basis functions, the sparsity of the RVM solution will ensure that the number of basis functions and thereby the computational complexity is kept low. We also introduce a mean field approach to the intractable classification model that is expected to give a very good approximation to exact Bayesian inference and contains the Laplace approximation as a special case. We test the algorithms on two large data sets with O(10^3-10^4) examples. The results indicate that Bayesian learning of large data sets, e.g. the MNIST database is realistic.

ei

PDF Web [BibTex]

PDF Web [BibTex]


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Kernel Dependency Estimation

Weston, J., Chapelle, O., Elisseeff, A., Schölkopf, B., Vapnik, V.

In Advances in Neural Information Processing Systems 15, pages: 873-880, (Editors: S Becker and S Thrun and K Obermayer), MIT Press, Cambridge, MA, USA, 16th Annual Conference on Neural Information Processing Systems (NIPS), October 2003 (inproceedings)

ei

PDF Web [BibTex]

PDF Web [BibTex]


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Derivative observations in Gaussian Process models of dynamic systems

Solak, E., Murray-Smith, R., Leithead, WE., Leith, D., Rasmussen, CE.

In Advances in Neural Information Processing Systems 15, pages: 1033-1040, (Editors: Becker, S., S. Thrun and K. Obermayer), MIT Press, Cambridge, MA, USA, Sixteenth Annual Conference on Neural Information Processing Systems (NIPS), October 2003 (inproceedings)

Abstract
Gaussian processes provide an approach to nonparametric modelling which allows a straightforward combination of function and derivative observations in an empirical model. This is of particular importance in identification of nonlinear dynamic systems from experimental data. 1) It allows us to combine derivative information, and associated uncertainty with normal function observations into the learning and inference process. This derivative information can be in the form of priors specified by an expert or identified from perturbation data close to equilibrium. 2) It allows a seamless fusion of multiple local linear models in a consistent manner, inferring consistent models and ensuring that integrability constraints are met. 3) It improves dramatically the computational efficiency of Gaussian process models for dynamic system identification, by summarising large quantities of near-equilibrium data by a handful of linearisations, reducing the training set size - traditionally a problem for Gaussian process models.

ei

PDF Web [BibTex]

PDF Web [BibTex]


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Linear Combinations of Optic Flow Vectors for Estimating Self-Motion: a Real-World Test of a Neural Model

Franz, MO., Chahl, JS.

In Advances in Neural Information Processing Systems 15, pages: 1319-1326, (Editors: Becker, S., S. Thrun and K. Obermayer), MIT Press, Cambridge, MA, USA, Sixteenth Annual Conference on Neural Information Processing Systems (NIPS), October 2003 (inproceedings)

Abstract
The tangential neurons in the fly brain are sensitive to the typical optic flow patterns generated during self-motion. In this study, we examine whether a simplified linear model of these neurons can be used to estimate self-motion from the optic flow. We present a theory for the construction of an estimator consisting of a linear combination of optic flow vectors that incorporates prior knowledge both about the distance distribution of the environment, and about the noise and self-motion statistics of the sensor. The estimator is tested on a gantry carrying an omnidirectional vision sensor. The experiments show that the proposed approach leads to accurate and robust estimates of rotation rates, whereas translation estimates turn out to be less reliable.

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PDF Web [BibTex]

PDF Web [BibTex]


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Clustering with the Fisher score

Tsuda, K., Kawanabe, M., Müller, K.

In Advances in Neural Information Processing Systems 15, pages: 729-736, (Editors: Becker, S. , S. Thrun, K. Obermayer), MIT Press, Cambridge, MA, USA, Sixteenth Annual Conference on Neural Information Processing Systems (NIPS), October 2003 (inproceedings)

Abstract
Recently the Fisher score (or the Fisher kernel) is increasingly used as a feature extractor for classification problems. The Fisher score is a vector of parameter derivatives of loglikelihood of a probabilistic model. This paper gives a theoretical analysis about how class information is preserved in the space of the Fisher score, which turns out that the Fisher score consists of a few important dimensions with class information and many nuisance dimensions. When we perform clustering with the Fisher score, K-Means type methods are obviously inappropriate because they make use of all dimensions. So we will develop a novel but simple clustering algorithm specialized for the Fisher score, which can exploit important dimensions. This algorithm is successfully tested in experiments with artificial data and real data (amino acid sequences).

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PDF Web [BibTex]

PDF Web [BibTex]


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Image statistics and anisotropic diffusion

Scharr, H., Black, M. J., Haussecker, H.

In Int. Conf. on Computer Vision, pages: 840-847, October 2003 (inproceedings)

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pdf [BibTex]

pdf [BibTex]