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2008


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A Unifying Probabilistic Framework for Analyzing Residual Dipolar Couplings

Habeck, M., Nilges, M., Rieping, W.

Journal of Biomolecular NMR, 40(2):135-144, February 2008 (article)

Abstract
Residual dipolar couplings provide complementary information to the nuclear Overhauser effect measurements that are traditionally used in biomolecular structure determination by NMR. In a de novo structure determination, however, lack of knowledge about the degree and orientation of molecular alignment complicates the analysis of dipolar coupling data. We present a probabilistic framework for analyzing residual dipolar couplings and demonstrate that it is possible to estimate the atomic coordinates, the complete molecular alignment tensor, and the error of the couplings simultaneously. As a by-product, we also obtain estimates of the uncertainty in the coordinates and the alignment tensor. We show that our approach encompasses existing methods for determining the alignment tensor as special cases, including least squares estimation, histogram fitting, and elimination of an explicit alignment tensor in the restraint energy.

ei

PDF DOI [BibTex]

2008


PDF DOI [BibTex]


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Contour-propagation Algorithms for Semi-automated Reconstruction of Neural Processes

Macke, J., Maack, N., Gupta, R., Denk, W., Schölkopf, B., Borst, A.

Journal of Neuroscience Methods, 167(2):349-357, January 2008 (article)

Abstract
A new technique, ”Serial Block Face Scanning Electron Microscopy” (SBFSEM), allows for automatic sectioning and imaging of biological tissue with a scanning electron microscope. Image stacks generated with this technology have a resolution sufficient to distinguish different cellular compartments, including synaptic structures, which should make it possible to obtain detailed anatomical knowledge of complete neuronal circuits. Such an image stack contains several thousands of images and is recorded with a minimal voxel size of 10-20nm in the x and y- and 30nm in z-direction. Consequently, a tissue block of 1mm3 (the approximate volume of the Calliphora vicina brain) will produce several hundred terabytes of data. Therefore, highly automated 3D reconstruction algorithms are needed. As a first step in this direction we have developed semiautomated segmentation algorithms for a precise contour tracing of cell membranes. These algorithms were embedded into an easy-to-operate user interface, which allows direct 3D observation of the extracted objects during the segmentation of image stacks. Compared to purely manual tracing, processing time is greatly accelerated.

ei

PDF Web DOI [BibTex]

PDF Web DOI [BibTex]


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A Quantum-Statistical-Mechanical Extension of Gaussian Mixture Model

Tanaka, K., Tsuda, K.

Journal of Physics: Conference Series, 95(012023):1-9, January 2008 (article)

Abstract
We propose an extension of Gaussian mixture models in the statistical-mechanical point of view. The conventional Gaussian mixture models are formulated to divide all points in given data to some kinds of classes. We introduce some quantum states constructed by superposing conventional classes in linear combinations. Our extension can provide a new algorithm in classifications of data by means of linear response formulas in the statistical mechanics.

ei

PDF PDF DOI [BibTex]

PDF PDF DOI [BibTex]


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Active tails enhance arboreal acrobatics in geckos

Jusufi, A., Goldman, D., Revzen, S., Full, R.

PNAS, 105(11):4215-4219, 2008 (article)

bio

link (url) [BibTex]

link (url) [BibTex]


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Size dependent motion of nanodroplets on chemical steps

Moosavi, A., Rauscher, M., Dietrich, S.

{Journal of Chemical Physics}, 129(4), 2008 (article)

icm

link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Magnetization and susceptibility of ferrofluids

Szalai, I., Dietrich, S.

{Journal of Physics: Condensed Matter}, 20(20), 2008 (article)

icm

[BibTex]

[BibTex]


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Learning to control in operational space

Peters, J., Schaal, S.

International Journal of Robotics Research, 27, pages: 197-212, 2008, clmc (article)

Abstract
One of the most general frameworks for phrasing control problems for complex, redundant robots is operational space control. However, while this framework is of essential importance for robotics and well-understood from an analytical point of view, it can be prohibitively hard to achieve accurate control in face of modeling errors, which are inevitable in com- plex robots, e.g., humanoid robots. In this paper, we suggest a learning approach for opertional space control as a direct inverse model learning problem. A first important insight for this paper is that a physically cor- rect solution to the inverse problem with redundant degrees-of-freedom does exist when learning of the inverse map is performed in a suitable piecewise linear way. The second crucial component for our work is based on the insight that many operational space controllers can be understood in terms of a constrained optimal control problem. The cost function as- sociated with this optimal control problem allows us to formulate a learn- ing algorithm that automatically synthesizes a globally consistent desired resolution of redundancy while learning the operational space controller. From the machine learning point of view, this learning problem corre- sponds to a reinforcement learning problem that maximizes an immediate reward. We employ an expectation-maximization policy search algorithm in order to solve this problem. Evaluations on a three degrees of freedom robot arm are used to illustrate the suggested approach. The applica- tion to a physically realistic simulator of the anthropomorphic SARCOS Master arm demonstrates feasibility for complex high degree-of-freedom robots. We also show that the proposed method works in the setting of learning resolved motion rate control on real, physical Mitsubishi PA-10 medical robotics arm.

am ei

link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Effective Hamiltonian for fluid membranes in the presence of long-range forces

Dutka, F., Napiorkowski, M., Dietrich, S.

{Physical Review E}, 78(2), 2008 (article)

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DOI [BibTex]

DOI [BibTex]


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Lock and key model system

König, P., Roth, R., Dietrich, S.

{Europhysics Letters}, 84(06), 2008 (article)

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DOI [BibTex]

DOI [BibTex]


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Direct measurement of critical Casimir forces

Hertlein, C., Helden, L., Gambassi, A., Dietrich, S., Bechinger, C.

{Nature}, 451, pages: 172-175, 2008 (article)

icm

DOI [BibTex]

DOI [BibTex]


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Colloidal interactions at fluid interfaces

Oettel, M., Dietrich, S.

{Langmuir}, 24(4):1425-1441, 2008 (article)

icm

[BibTex]

[BibTex]


Voltage-Controllable Magnetic Composite Based on Multifunctional Polyethylene Microparticles
Voltage-Controllable Magnetic Composite Based on Multifunctional Polyethylene Microparticles

Ghosh, A., Sheridon, N. K., Fischer, P.

SMALL, 4(11):1956-1958, 2008 (article)

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DOI [BibTex]


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Stability of liquid ridges on chemical micro- and nanostripes

Mechkov, S., Rauscher, M., Dietrich, S.

{Physical Review E}, 77(6), 2008 (article)

Abstract
{10 pages}

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link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Motion of nanodroplets near chemical heterogeneities

Moosavi, A., Rauscher, M., Dietrich, S.

{Langmuir}, 24(3):734-742, 2008 (article)

icm

DOI [BibTex]

DOI [BibTex]


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Force balance of particles trapped at fluid interfaces

Dominguez, A., Oettel, M., Dietrich, S.

{The Journal of Chemical Physics}, 128(11), 2008 (article)

icm

[BibTex]

[BibTex]


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Wetting phenomena in nanofluidics

Rauscher, M., Dietrich, S.

{Annual Review of Materials Research}, 38, pages: 143-172, 2008 (article)

icm

link (url) DOI [BibTex]

link (url) DOI [BibTex]


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ENHANCED ADHESION OF PDMS SURFACES FUNCTIONALIZED BY POLY (n-BUTYL ACRYLATE) BRUSHES INSPIRED BY GECKO FOOT HAIRS

Nese, A., Lee, H., Dong, H., Aksak, B., Cusick, B., Kowalewski, T., Matyjaszewski, K., Sitti, M.

Polymer Preprints, 49(2):107, 2008 (article)

pi

[BibTex]

[BibTex]


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Design and development of the lifting and propulsion mechanism for a biologically inspired water runner robot

Floyd, S., Sitti, M.

IEEE transactions on robotics, 24(3):698-709, IEEE, 2008 (article)

pi

[BibTex]

[BibTex]


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Control of Cell Behavior by Aligned Micro/Nanofibrous Biomaterial Scaffolds Fabricated by Spinneret-Based Tunable Engineered Parameters (STEP) Technique

Nain, A. S., Phillippi, J. A., Sitti, M., MacKrell, J., Campbell, P. G., Amon, C.

Small, 4(8):1153-1159, Wiley Online Library, 2008 (article)

pi

[BibTex]

[BibTex]


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Simulation and analysis of a passive pitch reversal flapping wing mechanism for an aerial robotic platform

Arabagi, V., Sitti, M.

In Intelligent Robots and Systems, 2008. IROS 2008. IEEE/RSJ International Conference on, pages: 1260-1265, 2008 (inproceedings)

pi

Project Page [BibTex]

Project Page [BibTex]


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Adaptation to a sub-optimal desired trajectory

M. Mistry, E. A. G. L. T. Y. S. S. M. K.

Advances in Computational Motor Control VII, Symposium at the Society for Neuroscience Meeting, Washington DC, 2008, 2008, clmc (article)

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PDF [BibTex]

PDF [BibTex]


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Human movement generation based on convergent flow fields: A computational model and a behavioral experiment

Hoffmann, H., Schaal, S.

In Advances in Computational Motor Control VII, Symposium at the Society for Neuroscience Meeting, Washington DC, 2008, 2008, clmc (inproceedings)

am

link (url) [BibTex]

link (url) [BibTex]


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Texture, microstructure and mechanical properties of equiaxed ultrafine-grained Zr fabricated by accumulative roll bonding

Jiang, L., Perez-Prado, M. T., Gruber, P. A., Arzt, E., Ruano, O. A., Kassner, M. E.

{Acta Materialia}, 56(6):1228-1242, 2008 (article)

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[BibTex]

[BibTex]


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Theory of size mismatched alloy systems: many-body Kanzaki forces

Shchyglo, O., Diaz-Ortiz, A., Udyansky, A., Bugaev, V. N., Reichert, H., Dosch, H., Drautz, R.

{Journal of Physics: Condensed Matter}, 20, pages: 1-9, 2008 (article)

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[BibTex]

[BibTex]


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Pinning of domain walls in composite particles

Kronmüller, H., Goll, D.

{Physica B}, 403, pages: 237-241, 2008 (article)

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DOI [BibTex]

DOI [BibTex]


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Chaotic vortex dynamics and low current phases in the remanent state of MgB2 thin films

Albrecht, J., Audehm, P., Djupmyr, M.

{Superconductor Science and Technology}, 21, 2008 (article)

mms

DOI [BibTex]

DOI [BibTex]


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Continuous and discontinuous grain-boundary wetting in ZnxAl1-x

Straumal, B. B., Gornakova, A. S., Kogtenkova, O. A., Protasova, S. G., Sursaeva, V. G., Baretzky, B.

{Physical Review B}, 78, 2008 (article)

mms

DOI [BibTex]

DOI [BibTex]


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Magnetic circular dichroism in two-photon absorption and depth-resolved magnetic microscopy

Seib, J., Fähnle, M.

{Physical Review B}, 77, 2008 (article)

mms

DOI [BibTex]

DOI [BibTex]


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Heat of adsorption for hydrogen in microporous high-surface-area materials

Schmitz, B., Müller, U., Trukhan, N., Schubert, M., Férey, G., Hirscher, M.

{ChemPhysChem}, 9, 2008 (article)

mms

DOI [BibTex]

DOI [BibTex]


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Untersuchungen der Desorption von Wasserstoff in metall-organischen Gerüsten

Panella, B., Hönes, K., Müller, U., Trukhan, N., Schubert, M., Pütter, H., Hirscher, M.

{Angewandte Chemie}, 120, pages: 2169-2173, 2008 (article)

mms

DOI [BibTex]

DOI [BibTex]


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Influence of domain wall pinning on the dynamic behavior of magnetic vortex structures: Time-resolved scanning x-ray transmission microscopy in NiFe thin film structures

Vansteenkiste, A., De Baerdemaeker, J., Chou, K. W., Stoll, H., Curcic, M., Tyliszczak, T., Woltersdorf, G., Back, C. H., Schütz, G., Van Waeyenberge, B.

{Physical Review B}, 77, 2008 (article)

mms

DOI [BibTex]

DOI [BibTex]


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Temperature dependence of mechanical properties in ultrathin Au films with and without passivation

Gruber, P. A., Olliges, S., Arzt, E., Spolenak, R.

{Journal of Materials Research}, 23(9):2406-2419, 2008 (article)

mms

DOI [BibTex]

DOI [BibTex]


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Structure, phase composition, and microhardness of carbon steels after high-pressure torsion

Mazilkin, A. A., Straumal, B., Protasova, S. G., Dobatkin, S. V., Baretzky, B.

{Journal of Materials Science}, 43, pages: 3800-3805, 2008 (article)

mms

DOI [BibTex]

DOI [BibTex]


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Pattern generators with sensory feedback for the control of quadruped locomotion

Righetti, L., Ijspeert, A.

In 2008 IEEE International Conference on Robotics and Automation, pages: 819-824, IEEE, Pasadena, USA, 2008 (inproceedings)

Abstract
Central pattern generators (CPGs) are becoming a popular model for the control of locomotion of legged robots. Biological CPGs are neural networks responsible for the generation of rhythmic movements, especially locomotion. In robotics, a systematic way of designing such CPGs as artificial neural networks or systems of coupled oscillators with sensory feedback inclusion is still missing. In this contribution, we present a way of designing CPGs with coupled oscillators in which we can independently control the ascending and descending phases of the oscillations (i.e. the swing and stance phases of the limbs). Using insights from dynamical system theory, we construct generic networks of oscillators able to generate several gaits under simple parameter changes. Then we introduce a systematic way of adding sensory feedback from touch sensors in the CPG such that the controller is strongly coupled with the mechanical system it controls. Finally we control three different simulated robots (iCub, Aibo and Ghostdog) using the same controller to show the effectiveness of the approach. Our simulations prove the importance of independent control of swing and stance duration. The strong mutual coupling between the CPG and the robot allows for more robust locomotion, even under non precise parameters and non-flat environment.

mg

link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Experimental Study of Limit Cycle and Chaotic Controllers for the Locomotion of Centipede Robots

Matthey, L., Righetti, L., Ijspeert, A.

In 2008 IEEE/RSJ International Conference on Intelligent Robots and Systems, pages: 1860-1865, IEEE, Nice, France, sep 2008 (inproceedings)

Abstract
In this contribution we present a CPG (central pattern generator) controller based on coupled Rossler systems. It is able to generate both limit cycle and chaotic behaviors through bifurcation. We develop an experimental test bench to measure quantitatively the performance of different controllers on unknown terrains of increasing difficulty. First, we show that for flat terrains, open loop limit cycle systems are the most efficient (in terms of speed of locomotion) but that they are quite sensitive to environmental changes. Second, we show that sensory feedback is a crucial addition for unknown terrains. Third, we show that the chaotic controller with sensory feedback outperforms the other controllers in very difficult terrains and actually promotes the emergence of short synchronized movement patterns. All that is done using an unified framework for the generation of limit cycle and chaotic behaviors, where a simple parameter change can switch from one behavior to the other through bifurcation. Such flexibility would allow the automatic adaptation of the robot locomotion strategy to the terrain uncertainty.

mg

link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Rolling and spinning friction characterization of fine particles using lateral force microscopy based contact pushing

Sümer, B., Sitti, M.

Journal of Adhesion Science and Technology, 22(5-6):481-506, Taylor & Francis Group, 2008 (article)

pi

[BibTex]

[BibTex]


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Fabrication and Characterization of Biologically Inspired Mushroom-Shaped Elastomer Microfiber Arrays

Kim, S., Sitti, M.

In ASME 2008 International Design Engineering Technical Conferences and Computers and Information in Engineering Conference, pages: 839-847, 2008 (inproceedings)

pi

Project Page [BibTex]

Project Page [BibTex]


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Gecko inspired micro-fibrillar adhesives for wall climbing robots on micro/nanoscale rough surfaces

Aksak, B., Murphy, M. P., Sitti, M.

In Robotics and Automation, 2008. ICRA 2008. IEEE International Conference on, pages: 3058-3063, 2008 (inproceedings)

pi

Project Page [BibTex]

Project Page [BibTex]


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Modeling the soft backing layer thickness effect on adhesion of elastic microfiber arrays

Long, R., Hui, C., Kim, S., Sitti, M.

Journal of Applied Physics, 104(4):044301, AIP, 2008 (article)

pi

Project Page [BibTex]

Project Page [BibTex]


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Cross-talk compensation in atomic force microscopy

Onal, C. D., Sümer, B., Sitti, M.

Review of scientific instruments, 79(10):103706, AIP, 2008 (article)

pi

[BibTex]

[BibTex]


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Miniature Mobile Robots Down to Micron Scale

Sitti, M.

In Micro-NanoMechatronics and Human Science, 2008. MHS 2008. International Symposium on, pages: 525-525, 2008 (inproceedings)

pi

[BibTex]

[BibTex]


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Operational space control: A theoretical and emprical comparison

Nakanishi, J., Cory, R., Mistry, M., Peters, J., Schaal, S.

International Journal of Robotics Research, 27(6):737-757, 2008, clmc (article)

Abstract
Dexterous manipulation with a highly redundant movement system is one of the hallmarks of hu- man motor skills. From numerous behavioral studies, there is strong evidence that humans employ compliant task space control, i.e., they focus control only on task variables while keeping redundant degrees-of-freedom as compliant as possible. This strategy is robust towards unknown disturbances and simultaneously safe for the operator and the environment. The theory of operational space con- trol in robotics aims to achieve similar performance properties. However, despite various compelling theoretical lines of research, advanced operational space control is hardly found in actual robotics imple- mentations, in particular new kinds of robots like humanoids and service robots, which would strongly profit from compliant dexterous manipulation. To analyze the pros and cons of different approaches to operational space control, this paper focuses on a theoretical and empirical evaluation of different methods that have been suggested in the literature, but also some new variants of operational space controllers. We address formulations at the velocity, acceleration and force levels. First, we formulate all controllers in a common notational framework, including quaternion-based orientation control, and discuss some of their theoretical properties. Second, we present experimental comparisons of these approaches on a seven-degree-of-freedom anthropomorphic robot arm with several benchmark tasks. As an aside, we also introduce a novel parameter estimation algorithm for rigid body dynamics, which ensures physical consistency, as this issue was crucial for our successful robot implementations. Our extensive empirical results demonstrate that one of the simplified acceleration-based approaches can be advantageous in terms of task performance, ease of parameter tuning, and general robustness and compliance in face of inevitable modeling errors.

am

link (url) [BibTex]

link (url) [BibTex]


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Movement reproduction and obstacle avoidance with dynamic movement primitives and potential fields

Park, D., Hoffmann, H., Pastor, P., Schaal, S.

In IEEE International Conference on Humanoid Robots, 2008., 2008, clmc (inproceedings)

am

PDF [BibTex]

PDF [BibTex]


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Wetting and premelting of triple junctions and grain boundaries in the Al-Zn alloys

Straumal, B., Kogtenkova, O., Protasova, S., Mazilkin, A., Zieba, P., Czeppe, T., Wojewoda-Budka, J., Faryna, M.

In 495, pages: 126-131, Alicante, Spain, 2008 (inproceedings)

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DOI [BibTex]

DOI [BibTex]


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Interfaces in driven Ising models: shear enhances confinement

Smith, T. H. R., Vasilyev, O., Abraham, D. B., Maciolek, A., Schmidt, M.

{Physical Review Letters}, 101(6), 2008 (article)

mms

DOI [BibTex]

DOI [BibTex]


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Planar high-Tc superconducting quantum interference device gradiometer for simultaneous measurements of two magnetic field gradients

Steppke, A., Becker, C., Grosse, V., Dörrer, L., Schmidl, F., Seidel, P., Djupmyr, M., Albrecht, J.

{Applied Physics Letters}, 92, 2008 (article)

mms

DOI [BibTex]

DOI [BibTex]


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Terminal contact elements of insect attachment devices studied by transmission X-ray microscopy

Eimüller, T., Guttmann, P., Gorb, S. N.

{Journal of Experimental Biology}, 211, pages: 1958-1963, 2008 (article)

mms

[BibTex]

[BibTex]


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Increase of Co solubility with decreasing grain size in ZnO

Straumal, B. B., Mazilkin, A. A., Protasova, S. G., Myatiev, A. A., Straumal, P. B., Baretzky, B.

{Acta Materialia}, 56, pages: 6246-6256, 2008 (article)

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DOI [BibTex]

DOI [BibTex]