Header logo is


2015


no image
Grain boundaries as a source of ferromagnetism and increased solubility of Ni in nanograined ZnO

Straumal, B. B., Mazilkin, A. A., Protasova, S. G., Stakhanova, S. V., Straumal, P. B., Bulatov, M. F., Schütz, G., Tietze, T., Goering, E., Baretzky, B.

{Reviews on Advanced Materials Science}, 41, pages: 61-71, 2015 (article)

mms

[BibTex]

2015


[BibTex]


no image
Gyrational modes of benzenelike magnetic vortex molecules

Adolff, C. F., Hänze, M., Pues, M., Weigand, M., Meier, G.

{Physical Review B}, 92(2), American Physical Society, Woodbury, NY, 2015 (article)

mms

DOI [BibTex]

DOI [BibTex]


no image
"Job-Sharing" storage of hydrogen in Ru/Li2O nanocomposites

Fu, L., Tang, K., Oh, H., Kandavel, M., Bräuniger, T., Vinod Chandran, C., Menzel, A., Hirscher, M., Samuelis, D., Maier, J.

{Nano Letters}, 15(6):4170-4175, American Chemical Society, Washington, DC, 2015 (article)

mms

DOI [BibTex]

DOI [BibTex]


no image
Overview of the multilayer-Fresnel zone plate and the kinoform lens development at MPI for Intelligent Systems

Sanli, U., Keskinbora, K., Grévent, C., Schütz, G.

{Proceedings of SPIE}, 9510, SPIE, Bellingham, Washington, 2015 (article)

mms

DOI [BibTex]


no image
Transition matrix elements for electron-phonon scattering: Phenomenological theory and ab initio electron theory

Illg, C., Haag, M., Müller, B. Y., Czycholl, G., Fähnle, M.

{Physical Review B}, 92(19), American Physical Society, Woodbury, NY, 2015 (article)

mms

DOI [BibTex]

DOI [BibTex]


no image
Phase evolution in single-crystalline LiFePO4 followed by in situ scanning X-ray microscopy of a micrometre-sized battery

Ohmer, N., Fenk, B., Samuelis, D., Chen, C., Maier, J., Weigand, M., Goering, E., Schütz, G.

{Nature Communications}, 6, Nature Publishing Group, London, 2015 (article)

mms

DOI [BibTex]

DOI [BibTex]


no image
Nitrogen-rich covalent triazine frameworks as high-performance platforms for selective carbon capture and storage

Hug, S., Stegbauer, L., Oh, H., Hirscher, M., Lotsch, B. V.

{Chemistry of Materials}, 27(23):8001-8010, American Chemical Society, Washington, D.C., 2015 (article)

mms

DOI [BibTex]

DOI [BibTex]


no image
Novel plasticity rule can explain the development of sensorimotor intelligence

Der, R., Martius, G.

Proceedings of the National Academy of Sciences, 112(45):E6224-E6232, 2015 (article)

Abstract
Grounding autonomous behavior in the nervous system is a fundamental challenge for neuroscience. In particular, self-organized behavioral development provides more questions than answers. Are there special functional units for curiosity, motivation, and creativity? This paper argues that these features can be grounded in synaptic plasticity itself, without requiring any higher-level constructs. We propose differential extrinsic plasticity (DEP) as a new synaptic rule for self-learning systems and apply it to a number of complex robotic systems as a test case. Without specifying any purpose or goal, seemingly purposeful and adaptive rhythmic behavior is developed, displaying a certain level of sensorimotor intelligence. These surprising results require no system-specific modifications of the DEP rule. They rather arise from the underlying mechanism of spontaneous symmetry breaking, which is due to the tight brain body environment coupling. The new synaptic rule is biologically plausible and would be an interesting target for neurobiological investigation. We also argue that this neuronal mechanism may have been a catalyst in natural evolution.

al

link (url) DOI Project Page [BibTex]

link (url) DOI Project Page [BibTex]


no image
Multilayer Fresnel zone plates for X-ray microscopy

Sanli, U. T., Keskinbora, K., Grévent, C., Szeghalmi, A., Knez, M., Schütz, G.

{Microscopy and Microanalysis}, 21(Suppl 3):1987-1988, Springer-Verlag New York, New York, NY, 2015 (article)

mms

DOI [BibTex]

DOI [BibTex]


no image
Interfacial dominated ferromagnetism in nanograined ZnO: a \muSR and DFT study

Tietze, T., Audehm, P., Chen, Y., Schütz, G., Straumal, B. B., Protasova, S. G., Mazilkin, A. A., Straumal, P. B., Prokscha, T., Luetkens, H., Salman, Z., Suter, A., Baretzky, B., Fink, K., Wenzel, W., Danilov, D., Goering, E.

{Scientific Reports}, 5, pages: 8871-8876, Nature Publishing Group, London, UK, 2015 (article)

mms

DOI [BibTex]

DOI [BibTex]


no image
Preparation of a ferromagnetic barrier in YBa2Cu3O7-delta thinner than the coherence length

Soltan, S., Albrecht, J., Goering, E., Schütz, G., Mustafa, L., Keimer, B., Habermeier, H.

{Journal of Applied Physics}, 118(22), AIP Publishing, New York, NY, 2015 (article)

mms

DOI [BibTex]

DOI [BibTex]


no image
Microanalytical methods for in-situ high-resolution analysis of rock varnish at the micrometer to nanometer scale

Macholdt, D. S., Jochum, K. P., Pöhlker, C., Stoll, B., Weis, U., Weber, B., Müller, M., Kapl, M., Buhre, S., Kilcoyne, A. L. D., Weigand, M., Scholz, D., Al-Amri, A. M., Andreae, M. O.

{Chemical Geology}, 411, pages: 57-68, Elsevier, Amsterdam, 2015 (article)

mms

DOI [BibTex]

DOI [BibTex]


no image
Chemical composition, microstructure, and hygroscopic properties of aerosol particles at the Zotino Tall Tower Observatory (ZOTTO), Siberia, during a summer campaign

Mikhailov, E. F., Mironov, G. N., Pöhlker, C., Chi, X., Krüger, M., Shiraiwa, M., Förster, J., Pöschl, U., Vlasenko, S. S., Ryshkevich, T. I., Weigand, M., Kilcoyne, A. L. D., Andreae, M.

{Atmospheric Chemistry and Physics}, 15(15):8847-8869, European Geosciences Union, Katlenburg-Lindau, Germany, 2015 (article)

mms

DOI [BibTex]

DOI [BibTex]


no image
Orbital reflectometry of PrNiO3/PrAlO3 superlattices

Wu, M., Benckiser, E., Audehm, P., Goering, E., Wochner, P., Christiani, G., Logvenov, G., Habermeier, H., Keimer, B.

{Physical Review B}, 91(19), American Physical Society, Woodbury, NY, 2015 (article)

mms

DOI [BibTex]

DOI [BibTex]


no image
Dynamic domain wall chirality rectification by rotating magnetic fields

Bisig, A., Mawass, M., Stärk, M., Moutafis, C., Rhensius, J., Heidler, J., Gliga, S., Weigand, M., Tyliszczak, T., Van Waeyenberge, B., Stoll, H., Schütz, G., Kläui, M.

{Applied Physics Letters}, 106(12), American Institute of Physics, Melville, NY, 2015 (article)

mms

DOI [BibTex]

DOI [BibTex]


no image
Imaging spin dynamics on the nanoscale using X-ray microscopy

Stoll, H., Noske, M., Weigand, M., Richter, K., Krüger, B., Reeve, R. M., Hänze, M., Adolff, C. F., Stein, F., Meier, G., Kläui, M., Schütz, G.

{Frontiers in Physics}, 3, Frontiers Media, Lausanne, 2015 (article)

mms

DOI [BibTex]

DOI [BibTex]


no image
Structure Learning in Bayesian Sensorimotor Integration

Genewein, T, Hez, E, Razzaghpanah, Z, Braun, DA

PLoS Computational Biology, 11(8):1-27, August 2015 (article)

Abstract
Previous studies have shown that sensorimotor processing can often be described by Bayesian learning, in particular the integration of prior and feedback information depending on its degree of reliability. Here we test the hypothesis that the integration process itself can be tuned to the statistical structure of the environment. We exposed human participants to a reaching task in a three-dimensional virtual reality environment where we could displace the visual feedback of their hand position in a two dimensional plane. When introducing statistical structure between the two dimensions of the displacement, we found that over the course of several days participants adapted their feedback integration process in order to exploit this structure for performance improvement. In control experiments we found that this adaptation process critically depended on performance feedback and could not be induced by verbal instructions. Our results suggest that structural learning is an important meta-learning component of Bayesian sensorimotor integration.

ei

DOI [BibTex]

DOI [BibTex]


no image
Unique high-temperature performance of highly consensed MnBi permanent magnets

Chen, Y., Gregori, G., Leineweber, A., Qu, F., Chen, C., Tietze, T., Kronmüller, H., Schütz, G., Goering, E.

{Scripta Materialia}, 107, pages: 131-135, Pergamon, Tarrytown, NY, 2015 (article)

mms

DOI [BibTex]

DOI [BibTex]


no image
Quantifying Emergent Behavior of Autonomous Robots

Martius, G., Olbrich, E.

Entropy, 17(10):7266, 2015 (article)

al

link (url) DOI [BibTex]

link (url) DOI [BibTex]


no image
Electrical determination of vortex state in submicron magnetic elements

Gangwar, A., Bauer, H. G., Chauleau, J., Noske, M., Weigand, M., Stoll, H., Schütz, G., Back, C. H.

{Physical Review B}, 91(9), American Physical Society, Woodbury, NY, 2015 (article)

mms

DOI [BibTex]

DOI [BibTex]


no image
Mechanisms for the symmetric and antisymmetric switching of a magnetic vortex core: Differences and common aspects

Noske, M., Stoll, H., Fähnle, M., Hertel, R., Schütz, G.

{Physical Review B}, 91(1), American Physical Society, Woodbury, NY, 2015 (article)

mms

DOI [BibTex]

DOI [BibTex]


no image
High resolution, high efficiency mulitlayer Fresnel zone plates for soft and hard X-rays

Sanli, U., Keskinbora, K., Gregorczyk, K., Leister, J., Teeny, N., Grévent, C., Knez, M., Schütz, G.

{Proceedings of SPIE}, 9592, SPIE, Bellingham, Washington, 2015 (article)

mms

DOI [BibTex]

DOI [BibTex]


no image
Macroscopic drift current in the inverse Faraday effect

Hertel, R., Fähnle, M.

{Physical Review B}, 91(2), American Physical Society, Woodbury, NY, 2015 (article)

mms

DOI [BibTex]

DOI [BibTex]


no image
Single-step 3D nanofabrication of kinoform optics via gray-scale focused ion beam lithography for efficient X-ray focusing

Keskinbora, K., Grévent, C., Hirscher, M., Weigand, M., Schütz, G.

{Advanced Optical Materials}, 3, pages: 792-800, WILEY-VCH Verlag GmbH Co. KGaA, Weinheim, 2015 (article)

mms

DOI [BibTex]

DOI [BibTex]


no image
Band structure engineering of two-dimensional magnonic vortex crystals

Behncke, C., Hänze, M., Adolff, C. F., Weigand, M., Meier, G.

{Physical Review B}, 91(22), American Physical Society, Woodbury, NY, 2015 (article)

mms

DOI [BibTex]

DOI [BibTex]


no image
Towards denoising XMCD movies of fast magnetization dynamics using extended Kalman filter

Kopp, M., Harmeling, S., Schütz, G., Schölkopf, B., Fähnle, M.

{Ultramicroscopy}, 148, pages: 115-122, North-Holland, Amsterdam, 2015 (article)

mms

DOI [BibTex]

DOI [BibTex]


no image
A Reward-Maximizing Spiking Neuron as a Bounded Rational Decision Maker

Leibfried, F, Braun, DA

Neural Computation, 27(8):1686-1720, July 2015 (article)

Abstract
Rate distortion theory describes how to communicate relevant information most efficiently over a channel with limited capacity. One of the many applications of rate distortion theory is bounded rational decision making, where decision makers are modeled as information channels that transform sensory input into motor output under the constraint that their channel capacity is limited. Such a bounded rational decision maker can be thought to optimize an objective function that trades off the decision maker's utility or cumulative reward against the information processing cost measured by the mutual information between sensory input and motor output. In this study, we interpret a spiking neuron as a bounded rational decision maker that aims to maximize its expected reward under the computational constraint that the mutual information between the neuron's input and output is upper bounded. This abstract computational constraint translates into a penalization of the deviation between the neuron's instantaneous and average firing behavior. We derive a synaptic weight update rule for such a rate distortion optimizing neuron and show in simulations that the neuron efficiently extracts reward-relevant information from the input by trading off its synaptic strengths against the collected reward.

ei

DOI [BibTex]

DOI [BibTex]


no image
Magnetic moments induce strong phonon renormalization in FeSi

Krannich, S., Sidis, Y., Lamago, D., Heid, R., Mignot, J., von Löhneysen, H., Ivanov, A., Steffens, P., Keller, T., Wang, L., Goering, E., Weber, F.

{Nature Communications}, 6, Nature Publishing Group, London, 2015 (article)

mms

DOI [BibTex]

DOI [BibTex]


no image
What is epistemic value in free energy models of learning and acting? A bounded rationality perspective

Ortega, PA, Braun, DA

Cognitive Neuroscience, 6(4):215-216, December 2015 (article)

Abstract
Free energy models of learning and acting do not only care about utility or extrinsic value, but also about intrinsic value, that is, the information value stemming from probability distributions that represent beliefs or strategies. While these intrinsic values can be interpreted as epistemic values or exploration bonuses under certain conditions, the framework of bounded rationality offers a complementary interpretation in terms of information-processing costs that we discuss here.

ei

DOI [BibTex]

DOI [BibTex]


no image
Perpendicular magnetisation from in-plane fields in nano-scaled antidot lattices

Gräfe, J., Haering, F., Tietze, T., Audehm, P., Weigand, M., Wiedwald, U., Ziemann, P., Gawronski, P., Schütz, G., Goering, E. J.

{Nanotechnology}, 26(22), IOP Pub., Bristol, UK, 2015 (article)

mms

DOI Project Page [BibTex]

DOI Project Page [BibTex]


no image
Theory of ultrafast demagnetization after femtosecond laser pulses

Fähnle, M., Illg, C., Haag, M., Teeny, N.

{Acta Physica Polonica A}, 127(2):170-175, Państwowe Wydawnictwo Naukowe, Warszawa, 2015 (article)

mms

DOI [BibTex]

DOI [BibTex]


no image
Non-linear radial spinwave modes in thin magnetic disks

Helsen, M., Gangwar, Ajay, De Clercq, J., Vansteenkiste, A., Weigand, M., Back, C. H., Van Waeyenberge, B.

{Applied Physics Letters}, 106(3), American Institute of Physics, Melville, NY, 2015 (article)

mms

DOI [BibTex]

DOI [BibTex]


no image
Hydrogen isotope separation in metal-organic frameworks: Kinetic or chemical affinity quantum-sieving?

Savchenko, I., Mavrandonakis, A., Heine, T., Oh, H., Teufel, J., Hirscher, M.

{Microporous and Mesoporous Materials}, 216, pages: 133-137, Elsevier, Amsterdam, 2015 (article)

mms

DOI [BibTex]

DOI [BibTex]


no image
High-resolution dichroic imaging of magnetic flux distributions in superconductors with scanning x-ray microscopy

Ruoß, S., Stahl, C., Weigand, M., Schütz, G., Albrecht, J.

{Applied Physics Letters}, 106, American Institute of Physics, Melville, NY, 2015 (article)

mms

DOI [BibTex]

DOI [BibTex]


no image
Preparation and characterisation of epitaxial Pt/Cu/FeMn/Co thin films on (100)-oriented MgO single crystals

Schmidt, M., Gräfe, J., Audehm, P., Phillipp, F., Schütz, G., Goering, E.

{Physica Status Solidi A}, 212(10):2114-2123, Wiley-VCH, Weinheim, 2015 (article)

mms

DOI [BibTex]

DOI [BibTex]


no image
Probing the magnetic moments of [MnIII6CrIII]3+ single-molecule magnets - A cross comparison of XMCD and spin-resolved electron spectroscopy

Helmstedt, A., Dohmeier, N., Müller, N., Gryzia, A., Brechling, A., Heinzmann, U., Hoeke, V., Krickemeyer, E., Glaser, T., Leicht, P., Fonin, M., Tietze, T., Joly, L., Kuepper, K.

{Journal of Electron Spectroscopy and Related Phenomena}, 198, pages: 12-19, Elsevier B.V., Amsterdam, 2015 (article)

mms

DOI [BibTex]

DOI [BibTex]

2007


no image
A Tutorial on Spectral Clustering

von Luxburg, U.

Statistics and Computing, 17(4):395-416, December 2007 (article)

Abstract
In recent years, spectral clustering has become one of the most popular modern clustering algorithms. It is simple to implement, can be solved efficiently by standard linear algebra software, and very often outperforms traditional clustering algorithms such as the k-means algorithm. On the first glance spectral clustering appears slightly mysterious, and it is not obvious to see why it works at all and what it really does. The goal of this tutorial is to give some intuition on those questions. We describe different graph Laplacians and their basic properties, present the most common spectral clustering algorithms, and derive those algorithms from scratch by several different approaches. Advantages and disadvantages of the different spectral clustering algorithms are discussed.

ei

PDF PDF DOI [BibTex]

2007


PDF PDF DOI [BibTex]


no image
A Tutorial on Kernel Methods for Categorization

Jäkel, F., Schölkopf, B., Wichmann, F.

Journal of Mathematical Psychology, 51(6):343-358, December 2007 (article)

Abstract
The abilities to learn and to categorize are fundamental for cognitive systems, be it animals or machines, and therefore have attracted attention from engineers and psychologists alike. Modern machine learning methods and psychological models of categorization are remarkably similar, partly because these two fields share a common history in artificial neural networks and reinforcement learning. However, machine learning is now an independent and mature field that has moved beyond psychologically or neurally inspired algorithms towards providing foundations for a theory of learning that is rooted in statistics and functional analysis. Much of this research is potentially interesting for psychological theories of learning and categorization but also hardly accessible for psychologists. Here, we provide a tutorial introduction to a popular class of machine learning tools, called kernel methods. These methods are closely related to perceptrons, radial-basis-function neural networks and exemplar theories of catego rization. Recent theoretical advances in machine learning are closely tied to the idea that the similarity of patterns can be encapsulated in a positive definite kernel. Such a positive definite kernel can define a reproducing kernel Hilbert space which allows one to use powerful tools from functional analysis for the analysis of learning algorithms. We give basic explanations of some key concepts—the so-called kernel trick, the representer theorem and regularization—which may open up the possibility that insights from machine learning can feed back into psychology.

ei

PDF Web DOI [BibTex]

PDF Web DOI [BibTex]


no image
Accurate Splice site Prediction Using Support Vector Machines

Sonnenburg, S., Schweikert, G., Philips, P., Behr, J., Rätsch, G.

BMC Bioinformatics, 8(Supplement 10):1-16, December 2007 (article)

Abstract
Background: For splice site recognition, one has to solve two classification problems: discriminating true from decoy splice sites for both acceptor and donor sites. Gene finding systems typically rely on Markov Chains to solve these tasks. Results: In this work we consider Support Vector Machines for splice site recognition. We employ the so-called weighted degree kernel which turns out well suited for this task, as we will illustrate in several experiments where we compare its prediction accuracy with that of recently proposed systems. We apply our method to the genome-wide recognition of splice sites in Caenorhabditis elegans, Drosophila melanogaster, Arabidopsis thaliana, Danio rerio, and Homo sapiens. Our performance estimates indicate that splice sites can be recognized very accurately in these genomes and that our method outperforms many other methods including Markov Chains, GeneSplicer and SpliceMachine. We provide genome-wide predictions of splice sites and a stand-alone prediction tool ready to be used for incorporation in a gene finder. Availability: Data, splits, additional information on the model selection, the whole genome predictions, as well as the stand-alone prediction tool are available for download at http:// www.fml.mpg.de/raetsch/projects/splice.

ei

PDF DOI [BibTex]

PDF DOI [BibTex]


no image
A unifying framework for robot control with redundant DOFs

Peters, J., Mistry, M., Udwadia, F., Nakanishi, J., Schaal, S.

Autonomous Robots, 24(1):1-12, October 2007 (article)

Abstract
Recently, Udwadia (Proc. R. Soc. Lond. A 2003:1783–1800, 2003) suggested to derive tracking controllers for mechanical systems with redundant degrees-of-freedom (DOFs) using a generalization of Gauss’ principle of least constraint. This method allows reformulating control problems as a special class of optimal controllers. In this paper, we take this line of reasoning one step further and demonstrate that several well-known and also novel nonlinear robot control laws can be derived from this generic methodology. We show experimental verifications on a Sarcos Master Arm robot for some of the derived controllers. The suggested approach offers a promising unification and simplification of nonlinear control law design for robots obeying rigid body dynamics equations, both with or without external constraints, with over-actuation or underactuation, as well as open-chain and closed-chain kinematics.

ei

PDF PDF DOI [BibTex]

PDF PDF DOI [BibTex]


no image
The Need for Open Source Software in Machine Learning

Sonnenburg, S., Braun, M., Ong, C., Bengio, S., Bottou, L., Holmes, G., LeCun, Y., Müller, K., Pereira, F., Rasmussen, C., Rätsch, G., Schölkopf, B., Smola, A., Vincent, P., Weston, J., Williamson, R.

Journal of Machine Learning Research, 8, pages: 2443-2466, October 2007 (article)

Abstract
Open source tools have recently reached a level of maturity which makes them suitable for building large-scale real-world systems. At the same time, the field of machine learning has developed a large body of powerful learning algorithms for diverse applications. However, the true potential of these methods is not realized, since existing implementations are not openly shared, resulting in software with low usability, and weak interoperability. We argue that this situation can be significantly improved by increasing incentives for researchers to publish their software under an open source model. Additionally, we outline the problems authors are faced with when trying to publish algorithmic implementations of machine learning methods. We believe that a resource of peer reviewed software accompanied by short articles would be highly valuable to both the machine learning and the general scientific community.

ei

PDF Web [BibTex]

PDF Web [BibTex]


no image
Some observations on the masking effects of Mach bands

Curnow, T., Cowie, DA., Henning, GB., Hill, NJ.

Journal of the Optical Society of America A, 24(10):3233-3241, October 2007 (article)

Abstract
There are 8 cycle / deg ripples or oscillations in performance as a function of location near Mach bands in experiments measuring Mach bands’ masking effects on random polarity signal bars. The oscillations with increments are 180 degrees out of phase with those for decrements. The oscillations, much larger than the measurement error, appear to relate to the weighting function of the spatial-frequency-tuned channel detecting the broad- band signals. The ripples disappear with step maskers and become much smaller at durations below 25 ms, implying either that the site of masking has changed or that the weighting function and hence spatial-frequency tuning is slow to develop.

ei

PDF Web DOI [BibTex]

PDF Web DOI [BibTex]


no image
Mining complex genotypic features for predicting HIV-1 drug resistance

Saigo, H., Uno, T., Tsuda, K.

Bioinformatics, 23(18):2455-2462, September 2007 (article)

Abstract
Human immunodeficiency virus type 1 (HIV-1) evolves in human body, and its exposure to a drug often causes mutations that enhance the resistance against the drug. To design an effective pharmacotherapy for an individual patient, it is important to accurately predict the drug resistance based on genotype data. Notably, the resistance is not just the simple sum of the effects of all mutations. Structural biological studies suggest that the association of mutations is crucial: Even if mutations A or B alone do not affect the resistance, a significant change might happen when the two mutations occur together. Linear regression methods cannot take the associations into account, while decision tree methods can reveal only limited associations. Kernel methods and neural networks implicitly use all possible associations for prediction, but cannot select salient associations explicitly. Our method, itemset boosting, performs linear regression in the complete space of power sets of mutations. It implements a forward feature selection procedure where, in each iteration, one mutation combination is found by an efficient branch-and-bound search. This method uses all possible combinations, and salient associations are explicitly shown. In experiments, our method worked particularly well for predicting the resistance of nucleotide reverse transcriptase inhibitors (NRTIs). Furthermore, it successfully recovered many mutation associations known in biological literature.

ei

Web DOI [BibTex]

Web DOI [BibTex]


no image
Real-Time Fetal Heart Monitoring in Biomagnetic Measurements Using Adaptive Real-Time ICA

Waldert, S., Bensch, M., Bogdan, M., Rosenstiel, W., Schölkopf, B., Lowery, C., Eswaran, H., Preissl, H.

IEEE Transactions on Biomedical Engineering, 54(10):1867-1874, September 2007 (article)

Abstract
Electrophysiological signals of the developing fetal brain and heart can be investigated by fetal magnetoencephalography (fMEG). During such investigations, the fetal heart activity and that of the mother should be monitored continuously to provide an important indication of current well-being. Due to physical constraints of an fMEG system, it is not possible to use clinically established heart monitors for this purpose. Considering this constraint, we developed a real-time heart monitoring system for biomagnetic measurements and showed its reliability and applicability in research and for clinical examinations. The developed system consists of real-time access to fMEG data, an algorithm based on Independent Component Analysis (ICA), and a graphical user interface (GUI). The algorithm extracts the current fetal and maternal heart signal from a noisy and artifact-contaminated data stream in real-time and is able to adapt automatically to continuously varying environmental parameters. This algorithm has been na med Adaptive Real-time ICA (ARICA) and is applicable to real-time artifact removal as well as to related blind signal separation problems.

ei

PDF Web DOI [BibTex]

PDF Web DOI [BibTex]


no image
Feature Selection for Trouble Shooting in Complex Assembly Lines

Pfingsten, T., Herrmann, D., Schnitzler, T., Feustel, A., Schölkopf, B.

IEEE Transactions on Automation Science and Engineering, 4(3):465-469, July 2007 (article)

Abstract
The final properties of sophisticated products can be affected by many unapparent dependencies within the manufacturing process, and the products’ integrity can often only be checked in a final measurement. Troubleshooting can therefore be very tedious if not impossible in large assembly lines. In this paper we show that Feature Selection is an efficient tool for serial-grouped lines to reveal causes for irregularities in product attributes. We compare the performance of several methods for Feature Selection on real-world problems in mass-production of semiconductor devices. Note to Practitioners— We present a data based procedure to localize flaws in large production lines: using the results of final quality inspections and information about which machines processed which batches, we are able to identify machines which cause low yield.

ei

PDF Web DOI [BibTex]

PDF Web DOI [BibTex]


no image
Gene selection via the BAHSIC family of algorithms

Song, L., Bedo, J., Borgwardt, K., Gretton, A., Smola, A.

Bioinformatics, 23(13: ISMB/ECCB 2007 Conference Proceedings):i490-i498, July 2007 (article)

Abstract
Motivation: Identifying significant genes among thousands of sequences on a microarray is a central challenge for cancer research in bioinformatics. The ultimate goal is to detect the genes that are involved in disease outbreak and progression. A multitude of methods have been proposed for this task of feature selection, yet the selected gene lists differ greatly between different methods. To accomplish biologically meaningful gene selection from microarray data, we have to understand the theoretical connections and the differences between these methods. In this article, we define a kernel-based framework for feature selection based on the Hilbert–Schmidt independence criterion and backward elimination, called BAHSIC. We show that several well-known feature selectors are instances of BAHSIC, thereby clarifying their relationship. Furthermore, by choosing a different kernel, BAHSIC allows us to easily define novel feature selection algorithms. As a further advantage, feature selection via BAHSIC works directly on multiclass problems. Results: In a broad experimental evaluation, the members of the BAHSIC family reach high levels of accuracy and robustness when compared to other feature selection techniques. Experiments show that features selected with a linear kernel provide the best classification performance in general, but if strong non-linearities are present in the data then non-linear kernels can be more suitable.

ei

Web DOI [BibTex]

Web DOI [BibTex]


no image
Phenotyping of Chondrocytes In Vivo and In Vitro Using cDNA Array Technology

Zien, A., Gebhard, P., Fundel, K., Aigner, T.

Clinical Orthopaedics and Related Research, 460, pages: 226-233, July 2007 (article)

Abstract
The cDNA array technology is a powerful tool to analyze a high number of genes in parallel. We investigated whether large-scale gene expression analysis allows clustering and identification of cellular phenotypes of chondrocytes in different in vivo and in vitro conditions. In 100% of cases, clustering analysis distinguished between in vivo and in vitro samples, suggesting fundamental differences in chondrocytes in situ and in vitro regardless of the culture conditions or disease status. It also allowed us to differentiate between healthy and osteoarthritic cartilage. The clustering also revealed the relative importance of the investigated culturing conditions (stimulation agent, stimulation time, bead/monolayer). We augmented the cluster analysis with a statistical search for genes showing differential expression. The identified genes provided hints to the molecular basis of the differences between the sample classes. Our approach shows the power of modern bioinformatic algorithms for understanding and class ifying chondrocytic phenotypes in vivo and in vitro. Although it does not generate new experimental data per se, it provides valuable information regarding the biology of chondrocytes and may provide tools for diagnosing and staging the osteoarthritic disease process.

ei

DOI [BibTex]

DOI [BibTex]


no image
Common Sequence Polymorphisms Shaping Genetic Diversity in Arabidopsis thaliana

Clark, R., Schweikert, G., Toomajian, C., Ossowski, S., Zeller, G., Shinn, P., Warthmann, N., Hu, T., Fu, G., Hinds, D., Chen, H., Frazer, K., Huson, D., Schölkopf, B., Nordborg, M., Rätsch, G., Ecker, J., Weigel, D.

Science, 317(5836):338-342, July 2007 (article)

Abstract
The genomes of individuals from the same species vary in sequence as a result of different evolutionary processes. To examine the patterns of, and the forces shaping, sequence variation in Arabidopsis thaliana, we performed high-density array resequencing of 20 diverse strains (accessions). More than 1 million nonredundant single-nucleotide polymorphisms (SNPs) were identified at moderate false discovery rates (FDRs), and ~4% of the genome was identified as being highly dissimilar or deleted relative to the reference genome sequence. Patterns of polymorphism are highly nonrandom among gene families, with genes mediating interaction with the biotic environment having exceptional polymorphism levels. At the chromosomal scale, regional variation in polymorphism was readily apparent. A scan for recent selective sweeps revealed several candidate regions, including a notable example in which almost all variation was removed in a 500-kilobase window. Analyzing the polymorphisms we describe in larger sets of accessions will enable a detailed understanding of forces shaping population-wide sequence variation in A. thaliana.

ei

PDF DOI [BibTex]

PDF DOI [BibTex]