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2004


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Experimentally optimal v in support vector regression for different noise models and parameter settings

Chalimourda, A., Schölkopf, B., Smola, A.

Neural Networks, 17(1):127-141, January 2004 (article)

Abstract
In Support Vector (SV) regression, a parameter ν controls the number of Support Vectors and the number of points that come to lie outside of the so-called var epsilon-insensitive tube. For various noise models and SV parameter settings, we experimentally determine the values of ν that lead to the lowest generalization error. We find good agreement with the values that had previously been predicted by a theoretical argument based on the asymptotic efficiency of a simplified model of SV regression. As a side effect of the experiments, valuable information about the generalization behavior of the remaining SVM parameters and their dependencies is gained. The experimental findings are valid even for complex ‘real-world’ data sets. Based on our results on the role of the ν-SVM parameters, we discuss various model selection methods.

ei

PDF DOI [BibTex]

2004


PDF DOI [BibTex]


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Introduction to Category Theory

Bousquet, O.

Internal Seminar, January 2004 (talk)

Abstract
A brief introduction to the general idea behind category theory with some basic definitions and examples. A perspective on higher dimensional categories is given.

ei

PDF [BibTex]

PDF [BibTex]


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Protein ranking: from local to global structure in the protein similarity network

Weston, J., Elisseeff, A., Zhou, D., Leslie, C., Noble, W.

Proceedings of the National Academy of Science, 101(17):6559-6563, 2004 (article)

Abstract
Biologists regularly search databases of DNA or protein sequences for evolutionary or functional relationships to a given query sequence. We describe a ranking algorithm that exploits the entire network structure of similarity relationships among proteins in a sequence database by performing a diffusion operation on a pre-computed, weighted network. The resulting ranking algorithm, evaluated using a human-curated database of protein structures, is efficient and provides significantly better rankings than a local network search algorithm such as PSI-BLAST.

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Web [BibTex]

Web [BibTex]


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Statistical Performance of Support Vector Machines

Blanchard, G., Bousquet, O., Massart, P.

2004 (article)

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PostScript [BibTex]


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Asymptotic Properties of the Fisher Kernel

Tsuda, K., Akaho, S., Kawanabe, M., Müller, K.

Neural Computation, 16(1):115-137, 2004 (article)

ei

PDF [BibTex]

PDF [BibTex]


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Some observations on the effects of slant and texture type on slant-from-texture

Rosas, P., Wichmann, F., Wagemans, J.

Vision Research, 44(13):1511-1535, 2004 (article)

Abstract
We measure the performance of five subjects in a slant-discrimination task for differently textured planes. As textures we used uniform lattices, randomly displaced lattices, circles (polka dots), Voronoi tessellations, plaids, 1/f noise, “coherent” noise and a leopard skin-like texture. Our results show: (1) Improving performance with larger slants for all textures. (2) Thus, following from (1), cases of “non-symmetrical” performance around a particular orientation. (3) For orientations sufficiently slanted, the different textures do not elicit major differences in performance, (4) while for orientations closer to the vertical plane there are marked differences between them. (5) These differences allow a rank-order of textures to be formed according to their “helpfulness”– that is, how easy the discrimination task is when a particular texture is mapped on the plane. Polka dots tend to allow the best slant discrimination performance, noise patterns the worst. Two additional experiments were conducted to test the generality of the obtained rank-order. First, the tilt of the planes was rotated to break the axis of gravity present in the original discrimination experiment. Second, the task was changed to a slant report task via probe adjustment. The results of both control experiments confirmed the texture-based rank-order previously obtained. We comment on the importance of these results for depth perception research in general, and in particular the implications our results have for studies of cue combination (sensor fusion) using texture as one of the cues involved.

ei

PDF [BibTex]

PDF [BibTex]


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Minimizing the Cross Validation Error to Mix Kernel Matrices of Heterogeneous Biological Data

Tsuda, K., Uda, S., Kin, T., Asai, K.

Neural Processing Letters, 19, pages: 63-72, 2004 (article)

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PDF [BibTex]

PDF [BibTex]


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A Tutorial on Support Vector Regression

Smola, A., Schölkopf, B.

Statistics and Computing, 14(3):199-222, 2004 (article)

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Web [BibTex]

Web [BibTex]


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Bayesian analysis of the Scatterometer Wind Retrieval Inverse Problem: Some New Approaches

Cornford, D., Csato, L., Evans, D., Opper, M.

Journal of the Royal Statistical Society B, 66, pages: 1-17, 3, 2004 (article)

Abstract
The retrieval of wind vectors from satellite scatterometer observations is a non-linear inverse problem.A common approach to solving inverse problems is to adopt a Bayesian framework and to infer the posterior distribution of the parameters of interest given the observations by using a likelihood model relating the observations to the parameters, and a prior distribution over the parameters.We show how Gaussian process priors can be used efficiently with a variety of likelihood models, using local forward (observation) models and direct inverse models for the scatterometer.We present an enhanced Markov chain Monte Carlo method to sample from the resulting multimodal posterior distribution.We go on to show how the computational complexity of the inference can be controlled by using a sparse, sequential Bayes algorithm for estimation with Gaussian processes.This helps to overcome the most serious barrier to the use of probabilistic, Gaussian process methods in remote sensing inverse problems, which is the prohibitively large size of the data sets.We contrast the sampling results with the approximations that are found by using the sparse, sequential Bayes algorithm.

ei

PDF [BibTex]

PDF [BibTex]


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Feature Selection for Support Vector Machines Using Genetic Algorithms

Fröhlich, H., Chapelle, O., Schölkopf, B.

International Journal on Artificial Intelligence Tools (Special Issue on Selected Papers from the 15th IEEE International Conference on Tools with Artificial Intelligence 2003), 13(4):791-800, 2004 (article)

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Web [BibTex]

Web [BibTex]


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Phenotypic Characterization of Human Chondrocyte Cell Line C-20/A4: A Comparison between Monolayer and Alginate Suspension Culture

Finger, F., Schorle, C., Söder, S., Zien, A., Goldring, M., Aigner, T.

Cells Tissues Organs, 178(2):65-77, 2004 (article)

Abstract
DNA microarray analysis was used to investigate the molecular phenotype of one of the first human chondrocyte cell lines, C-20/A4, derived from juvenile costal chondrocytes by immortalization with origin-defective simian virus 40 large T antigen. Clontech Human Cancer Arrays 1.2 and quantitative PCR were used to examine gene expression profiles of C-20/A4 cells cultured in the presence of serum in monolayer and alginate beads. In monolayer cultures, genes involved in cell proliferation were strongly upregulated compared to those expressed by human adult articular chondrocytes in primary culture. Of the cell cycle-regulated genes, only two, the CDK regulatory subunit and histone H4, were downregulated after culture in alginate beads, consistent with the ability of these cells to proliferate in suspension culture. In contrast, the expression of several genes that are involved in pericellular matrix formation, including MMP-14, COL6A1, fibronectin, biglycan and decorin, was upregulated when the C-20/A4 cells were transferred to suspension culture in alginate. Also, nexin-1, vimentin, and IGFBP-3, which are known to be expressed by primary chondrocytes, were differentially expressed in our study. Consistent with the proliferative phenotype of this cell line, few genes involved in matrix synthesis and turnover were highly expressed in the presence of serum. These results indicate that immortalized chondrocyte cell lines, rather than substituting for primary chondrocytes, may serve as models for extending findings on chondrocyte function not achievable by the use of primary chondrocytes.

ei

[BibTex]

[BibTex]


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Kernel Methods and their Potential Use in Signal Processing

Perez-Cruz, F., Bousquet, O.

IEEE Signal Processing Magazine, (Special issue on Signal Processing for Mining), 2004 (article) Accepted

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PostScript [BibTex]

PostScript [BibTex]


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Advanced Statistical Learning Theory

Bousquet, O.

Machine Learning Summer School, 2004 (talk)

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PDF [BibTex]

PDF [BibTex]


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E. Coli Inspired Propulsion for Swimming Microrobots

Behkam, Bahareh, Sitti, Metin

pages: 1037–1041, 2004 (article)

Abstract
Medical applications are among the most fascinating areas of microrobotics. For long, scientists have dreamed of miniature smart devices that can travel inside the human body and carry out a host of complex operations such as minimally invasive surgery (MIS), highly localized drug delivery, and screening for diseases that are in their very early stages. Still a distant dream, significant progress in micro and nanotechnology brings us closer to materializing it. For such a miniature device to be injected into the body, it has to be 800 μm or smaller in diameter. Miniature, safe and energy efficient propulsion systems hold the key to maturing this technology but they pose significant challenges. Scaling the macroscale natation mechanisms to micro/nano length scales is unfeasible. It has been estimated that a vibrating-fin driven swimming robot shorter than 6 mm can not overcome the viscous drag forces in water. In this paper, the authors propose a new type of propulsion inspired by the motility mechanism of bacteria with peritrichous flagellation, such as Escherichia coli, Salmonella typhimurium and Serratia marcescens. The perfomance of the propulsive mechanism is estimated by modeling the dynamics of the motion. The motion of the moving organelle is simulated and key parameters such as velocity, distribution of force and power requirments for different configurations of the tail are determined theoretically. In order to validate the theoretical result, a scaled up model of the swimming robot is fabricated and characterized in silicone oil using the Buckingham PI theorem for scaling. The results are compared with the theoretically computed values. These robots are intended to swim in stagnation/low velocity biofluid and reach currently inaccessible areas of the human body for disease inspection and possibly treatment. Potential target regions to use these robots include eyeball cavity, cerebrospinal fluid and the urinary system.

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link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Discovering optimal imitation strategies

Billard, A., Epars, Y., Calinon, S., Cheng, G., Schaal, S.

Robotics and Autonomous Systems, 47(2-3):68-77, 2004, clmc (article)

Abstract
This paper develops a general policy for learning relevant features of an imitation task. We restrict our study to imitation of manipulative tasks or of gestures. The imitation process is modeled as a hierarchical optimization system, which minimizes the discrepancy between two multi-dimensional datasets. To classify across manipulation strategies, we apply a probabilistic analysis to data in Cartesian and joint spaces. We determine a general metric that optimizes the policy of task reproduction, following strategy determination. The model successfully discovers strategies in six different imitative tasks and controls task reproduction by a full body humanoid robot.

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[BibTex]

[BibTex]


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Rhythmic movement is not discrete

Schaal, S., Sternad, D., Osu, R., Kawato, M.

Nature Neuroscience, 7(10):1137-1144, 2004, clmc (article)

Abstract
Rhythmic movements, like walking, chewing, or scratching, are phylogenetically old mo-tor behaviors found in many organisms, ranging from insects to primates. In contrast, discrete movements, like reaching, grasping, or kicking, are behaviors that have reached sophistication primarily in younger species, particularly in primates. Neurophysiological and computational research on arm motor control has focused almost exclusively on dis-crete movements, essentially assuming similar neural circuitry for rhythmic tasks. In con-trast, many behavioral studies focused on rhythmic models, subsuming discrete move-ment as a special case. Here, using a human functional neuroimaging experiment, we show that in addition to areas activated in rhythmic movement, discrete movement in-volves several higher cortical planning areas, despite both movement conditions were confined to the same single wrist joint. These results provide the first neuroscientific evi-dence that rhythmic arm movement cannot be part of a more general discrete movement system, and may require separate neurophysiological and theoretical treatment.

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link (url) [BibTex]

link (url) [BibTex]


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Uncompensated spins in a micro-patterned CoFeB / MnIr exchange bias system

Eimüller, T., Kato, T., Mizuno, T., Tsunashima, S., Quitmann, C., Ramsvik, T., Iwata, S., Schütz, G.

{Applied Physics Letters}, 85(12):2310-2312, 2004 (article)

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[BibTex]

[BibTex]


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Comparative study of magnetization reversal in isolated and strayfield coupled microcontacts

Meier, G., Eiselt, R., Bolte, M., Barthelmess, M., Eimüller, T., Fischer, P.

{Applied Physics Letters}, 85(7):1193-1195, 2004 (article)

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[BibTex]

[BibTex]


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Grain boundary faceting close to the \Sigma3 coincidence misorientation in copper

Straumal, B., Polyakov, S., Bischoff, E., Mittemeijer, E.

{Zeitschrift f\"ur Metallkunde}, 95, pages: 939-944, 2004 (article)

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[BibTex]

[BibTex]


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Photoelectron spectroscopy on Pt atoms and clusters deposited on C(0001)

Fauth, K., Schneider, N., He\ssler, M., Schütz, G.

{European Physical Journal D}, 29(1):57-61, 2004 (article)

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[BibTex]

[BibTex]


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Enhanced flux line pinning by substrate induced defects in YBCO thin films

Albrecht, J., Leonhardt, S., Habermeier, H.-U., Brück, S., Spolenak, R., Kronmüller, H.

{Physica C}, 404, pages: 18-21, 2004 (article)

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[BibTex]

[BibTex]


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Amorphous carbon nanotubes produced by a temperature controlled DC arc discharge

Liu, Y., Song, X., Zhao, T., Zhu, J., Hirscher, M., Phillipp, F.

{Carbon}, 42(8-9):1852-1855, 2004 (article)

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[BibTex]

[BibTex]


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Initial oxidation of quasicrystals - an investigation by high-resolution RBS and ERDA

Plachke, D., Khellaf, A., Kurth, M., Szökefalvy-Nagy, A., Carstanjen, H. D.

{Journal of Non-Crystalline Solids}, 334-335, pages: 524-531, 2004 (article)

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[BibTex]

[BibTex]


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First-principles modeling of magnetism and phase equilibria in binary alloys

Diaz-Ortiz, A., Drautz, R., Fähnle, M., Dosch, H.

{Journal of Alloys and Compounds}, 369, pages: 27-32, 2004 (article)

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[BibTex]

[BibTex]


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Critical thicknesses of domain formations in cubic particles and thin films

Kronmüller, H., Goll, D., Hertel, R., Schütz, G.

{Physica B}, 343(1-4):229-235, 2004 (article)

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[BibTex]

[BibTex]


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Learning from demonstration and adaptation of biped locomotion

Nakanishi, J., Morimoto, J., Endo, G., Cheng, G., Schaal, S., Kawato, M.

Robotics and Autonomous Systems, 47(2-3):79-91, 2004, clmc (article)

Abstract
In this paper, we introduce a framework for learning biped locomotion using dynamical movement primitives based on non-linear oscillators. Our ultimate goal is to establish a design principle of a controller in order to achieve natural human-like locomotion. We suggest dynamical movement primitives as a central pattern generator (CPG) of a biped robot, an approach we have previously proposed for learning and encoding complex human movements. Demonstrated trajectories are learned through movement primitives by locally weighted regression, and the frequency of the learned trajectories is adjusted automatically by a novel frequency adaptation algorithmbased on phase resetting and entrainment of coupled oscillators. Numerical simulations and experimental implementation on a physical robot demonstrate the effectiveness of the proposed locomotioncontroller.

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link (url) [BibTex]

link (url) [BibTex]


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Critical sizes for ferromagnetic spherical hollow nanoparticles

Goll, D., Berkowitz, A. E., Bertram, H. N.

{Physical Review B}, 70(18), 2004 (article)

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[BibTex]

[BibTex]


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Grain boundary wetting by a solid phase; microstructural development in a Zn-5 wt\textpercent Al alloy

Lopez, G. A., Mittemeijer, E. J., Straumal, B. B.

{Acta Materialia}, 52(15):4537-4545, 2004 (article)

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[BibTex]

[BibTex]


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Electronic correlations, magnetism, and structure of Fe-Al subsystems: An LDA+U study

Lechermann, F., Fähnle, M., Meyer, B., Elsässer, C.

{Physical Review B}, 69, 2004 (article)

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[BibTex]

[BibTex]


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Interaction of hydrogen isotopes with carbon nanostructures

Haluska, M., Hirscher, M., Becher, M., Dettlaff-Weglikowska, U., Chen, X., Roth, S.

{Materials Science and Engineering B}, 108, pages: 130-133, 2004 (article)

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[BibTex]

[BibTex]


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Formation of nanograined structure and decomposition of supersaturated solid solution during high pressure torsion of Al-Zn and Al-Mg alloys

Straumal, B. B., Baretzky, B., Mazilkin, A. A., Phillipp, F., Kogtenkova, O. A., Volkov, M. N., Valiev, R. Z.

{Acta Materialia}, 52, pages: 4469-4478, 2004 (article)

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[BibTex]

[BibTex]


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Ab-initio modeling of nonlinear magnetoelastic coupling in epitaxial films

Komelj, M., Fähnle, M.

{Journal of Magnetism and Magnetic Materials}, 272-276, pages: e1587-e1588, 2004 (article)

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[BibTex]

[BibTex]


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Atomic force microscope probe based controlled pushing for nanotribological characterization

Sitti, M.

IEEE/ASME Transactions on mechatronics, 9(2):343-349, IEEE, 2004 (article)

pi

[BibTex]

[BibTex]


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Effective exchange interaction in a quasi-two-dimensional self-assembled nanoparticle array

Wiedwald, U., Cerchez, M., Farle, M., Fauth, K., Schütz, G., Zürn, K., Boyen, H., Ziemann, P.

{Physical Review B}, 70, 2004 (article)

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DOI [BibTex]

DOI [BibTex]


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How well does total electron yield measure x-ray absorption in nanoparticles?

Fauth, K.

{Applied Physics Letters}, 85(15):3271-3273, 2004 (article)

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DOI [BibTex]

DOI [BibTex]


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Ordering and magnetism in Fe-Co: Dense sequence of ground-state structures

Drautz, R., Diaz-Ortiz, A., Fähnle, M., Dosch, H.

{Physical Review Letters}, 93(6), 2004 (article)

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[BibTex]

[BibTex]


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Thermal reversal of elongated ferromagnetic particles misoriented to the applied field

Goll, D., Bertram, H. N.

{IEEE Transactions on Magnetics}, 40(4):2416-2418, 2004 (article)

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[BibTex]

[BibTex]


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Anisotropy of the orbital moments and the magnetic dipole term Tz in CrO2: An ab-initio study

Komelj, M., Ederer, C., Fähnle, M.

{Physical Review B}, 69, 2004 (article)

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[BibTex]

[BibTex]


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Core-shell iron-iron oxide nanoparticles: magnetic properties and interactions

Theil-Kuhn, L., Bojesen, A., Timmermann, L., Fauth, K., Goering, E. J., Johnson, E., Meedom Nielsen, M., Morup, S.

{Journal of Magnetism and Magnetic Materials}, 272-276, pages: 1485-1486, 2004 (article)

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[BibTex]

[BibTex]


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Measurement of very low bulk concentrations (below 1 atppm) of hydrogen using ERDA

Tripathi, A., Kruse, O., Carstanjen, H. D.

{Nuclear Instruments and Methods B}, 219-220, pages: 435-439, 2004 (article)

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[BibTex]

[BibTex]


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Unusual doublet structure in proton magnetic-resonance spectra of yttrium and lutetium trihydrides

Majer, G., Telfah, A., Grinberg, F., Barnes, R. G.

{Physical Review B}, 70(13), 2004 (article)

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[BibTex]

[BibTex]


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Kinetics of primary nanocrystallization in Al-rich metallic glass with quenched-in nuclei

Wang, J. Q., Zhang, H. W., Gu, X. J., Lu, K., Sommer, F., Mittemeijer, E.

{Materials Science and Engineering A}, 375-377, pages: 980-984, 2004 (article)

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[BibTex]

[BibTex]


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3-dimensional Wulff diagrams for \Sigma3 grain boundaries in Cu

Straumal, B., Kucherinenko, Y., Baretzky, B.

{Reviews on Advanced Materials Science}, 7(1):23-31, 2004 (article)

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[BibTex]

[BibTex]


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First-principles study of the interplay between magnetism and phase equilibria in Fe-Co systems

Diaz-Ortiz, A., Drautz, R., Fähnle, M., Dosch, H.

{Journal of Magnetism and Magnetic Materials}, 272-276, pages: 780-782, 2004 (article)

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[BibTex]

[BibTex]


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Magnetic field optimization of permanent magnet unulators for arbitrary polarization

Bahrdt, J., Frentrup, W., Gaupp, A., Scheer, M., Englisch, U.

{Nuclear Instruments and Methods in Physics Research A}, 516, pages: 575-585, 2004 (article)

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[BibTex]

[BibTex]


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High-resolution imaging of fast magnetization dynamics in magnetic nanostructures

Stoll, H., Puzic, A., Van Waeyenberge, B., Fischer, P., Raabe, J., Buess, M., Haug, T., Höllinger, R., Back, C., Weiss, D., Denbeaux, G.

{Applied Physics Letters}, 84, pages: 3328-3330, 2004 (article)

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[BibTex]

[BibTex]


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Comparison of low-temperature magnetic relaxations in two systems GdAl2Dx (C15 Laves phase) and Fe3O4 (Inverse spinel)

Walz, F., Reule, H., Hirscher, M., Kronmüller, H.

{Physica Status Solidi B}, 241(2):389-400, 2004 (article)

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[BibTex]

[BibTex]