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2012


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Direct imaging of phase relation in a pair of coupled vortex oscillators

Vogel, A., Drews, A., Weigand, M., Meier, G.

{AIP Advances}, 2, 2012 (article)

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DOI [BibTex]

2012


DOI [BibTex]


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A sensorimotor paradigm for Bayesian model selection

Genewein, T, Braun, DA

Frontiers in Human Neuroscience, 6(291):1-16, October 2012 (article)

Abstract
Sensorimotor control is thought to rely on predictive internal models in order to cope efficiently with uncertain environments. Recently, it has been shown that humans not only learn different internal models for different tasks, but that they also extract common structure between tasks. This raises the question of how the motor system selects between different structures or models, when each model can be associated with a range of different task-specific parameters. Here we design a sensorimotor task that requires subjects to compensate visuomotor shifts in a three-dimensional virtual reality setup, where one of the dimensions can be mapped to a model variable and the other dimension to the parameter variable. By introducing probe trials that are neutral in the parameter dimension, we can directly test for model selection. We found that model selection procedures based on Bayesian statistics provided a better explanation for subjects’ choice behavior than simple non-probabilistic heuristics. Our experimental design lends itself to the general study of model selection in a sensorimotor context as it allows to separately query model and parameter variables from subjects.

ei

DOI [BibTex]

DOI [BibTex]


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Three-dimensional microfiber devices that mimic physiological environments to probe cell mechanics and signaling

Ruder, W. C., Pratt, E. D., Bakhru, S., Sitti, M., Zappe, S., Cheng, C., Antaki, J. F., LeDuc, P. R.

Lab on a Chip, 12(10):1775-1779, Royal Society of Chemistry, 2012 (article)

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[BibTex]

[BibTex]


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Active visual search in unknown environments using uncertain semantics

Aydemir, Alper, Pronobis, Andrzej, Jensfelt, Patric, Sj, Kristoffer, Aydemir, Alper, Jensfelt, Patric, Aydemir, A, Jensfelt, P, Aydemir, A, Jensfelt, P, others

Transactions, 1, pages: 2329-2335, IEEE, 2012 (article)

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[BibTex]

[BibTex]


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Modelling of conductive atomic force microscope probes for scanning tunnelling microscope operation

Ozcan, O, Sitti, M

IET Micro \& Nano Letters, 7(4):329-333, IET, 2012 (article)

pi

[BibTex]

[BibTex]


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Shape memory polymer-based flexure stiffness control in a miniature flapping-wing robot

Hines, L., Arabagi, V., Sitti, M.

IEEE Transactions on Robotics, 28(4):987-990, IEEE, 2012 (article)

pi

[BibTex]

[BibTex]


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Micro-manipulation using rotational fluid flows induced by remote magnetic micro-manipulators

Ye, Z., Diller, E., Sitti, M.

Journal of Applied Physics, 112(6):064912, AIP, 2012 (article)

pi

Project Page [BibTex]

Project Page [BibTex]


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Risk-Sensitivity in Bayesian Sensorimotor Integration

Grau-Moya, J, Ortega, PA, Braun, DA

PLoS Computational Biology, 8(9):1-7, sep 2012 (article)

Abstract
Information processing in the nervous system during sensorimotor tasks with inherent uncertainty has been shown to be consistent with Bayesian integration. Bayes optimal decision-makers are, however, risk-neutral in the sense that they weigh all possibilities based on prior expectation and sensory evidence when they choose the action with highest expected value. In contrast, risk-sensitive decision-makers are sensitive to model uncertainty and bias their decision-making processes when they do inference over unobserved variables. In particular, they allow deviations from their probabilistic model in cases where this model makes imprecise predictions. Here we test for risk-sensitivity in a sensorimotor integration task where subjects exhibit Bayesian information integration when they infer the position of a target from noisy sensory feedback. When introducing a cost associated with subjects' response, we found that subjects exhibited a characteristic bias towards low cost responses when their uncertainty was high. This result is in accordance with risk-sensitive decision-making processes that allow for deviations from Bayes optimal decision-making in the face of uncertainty. Our results suggest that both Bayesian integration and risk-sensitivity are important factors to understand sensorimotor integration in a quantitative fashion.

ei

DOI [BibTex]

DOI [BibTex]


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Accurate dosimetry in scanning transmission X-ray microscopes via the cross-linking threshold dose of poly(methyl methacrylate)

Leontowich, A. F. G., Hitchcock, A. P., Tyliszczak, T., Weigand, M., Wang, J., Karunakaran, C.

{Journal of Synchrotron Radiation}, 19(6):976-987, 2012 (article)

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DOI [BibTex]

DOI [BibTex]


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Biogenic potassium salt particles as seeds for secondary organic aerosal in the amazon

Pöhlker, C., Wiedemann, K. T., Sinha, B., Shiraiwa, M., Gunthe, S. S., Smith, M., Su, H., Artaxo, P., Chen, Q., Cheng, Y., Elbert, W., Gilles, M. K., Kilcoyne, A. L. D., Moffet, R. C., Weigand, M., Martin, S. T., Pöschl, U., Andreae, M. O.

{Science}, 337, pages: 1075-1078, 2012 (article)

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DOI [BibTex]

DOI [BibTex]


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Metal@COFs: Covalent organic frameworks as templates for Pd nanoparticles and hydrogen storage properties of Pd@COF-102 hybrid material

Kalidindi, S. B., Oh, H., Hirscher, M., Esken, D., Wiktor, C., Turner, S., Van Tendeloo, G., Fischer, R. A.

{Chemistry-a European Journal}, 18(35):10848-10856, VCH Verlagsgesellschaft, Weinheim, Germany, 2012 (article)

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DOI [BibTex]

DOI [BibTex]


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Ion beam lithography for direct patterning of high accuracy large area X-ray elements in gold on membranes

Nadzeyka, A., Peto, L., Bauerdick, S., Mayer, M., Keskinbora, K., Grévent, C., Weigand, M., Hirscher, M., Schütz, G.

{Microelectronic Engineering}, 98, pages: 198-201, 2012 (article)

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DOI [BibTex]

DOI [BibTex]


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Remotely addressable magnetic composite micropumps

Diller, E., Miyashita, S., Sitti, M.

Rsc Advances, 2(9):3850-3856, Royal Society of Chemistry, 2012 (article)

pi

[BibTex]

[BibTex]


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Micro- and nanoscale fluid flow on chemical channels

Dörfler, Fabian, Rauscher, Markus, Koplik, Joel, Harting, Jens, Dietrich, S.

{Soft Matter}, 8(35):9221-9234, 2012 (article)

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link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Novel characterization of the adsorption sites in large pore Metal-Organic Frameworks: Combination of X-ray powder diffraction and thermal desorption spectroscopy

Soleimani Dorcheh, A., Dinnebier, R. E., Kuc, A., Magdysyuk, O., Adams, F., Denysenko, D., Heine, T., Volkmer, D., Donner, W., Hirscher, M.

{Physical Chemistry Chemical Physics}, 14(37):12892-12897, 2012 (article)

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DOI [BibTex]

DOI [BibTex]


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Tunnel contacts for spin injection into silicon: The Si-Co interface with and without a MgO tunnel barrier - A study by high-resolution Rutherford backscattering

Dash, S. P., Goll, D., Kopold, P., Carstanjen, H. D.

{Advances in Materials Science and Engineering}, 2012, 2012 (article)

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DOI [BibTex]

DOI [BibTex]


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Fast spin-wave-mediated magnetic vortex core reversal

Kammerer, M., Stoll, H., Noske, M., Sproll, M., Weigand, M., Illg, C., Woltersdorf, G., Fähnle, M., Back, C., Schütz, G.

{Physical Review B}, 86(13), 2012 (article)

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DOI [BibTex]

DOI [BibTex]


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Deformation-driven formation of equilibrium phases in the Cu-Ni alloys

Straumal, B. B., Protasova, S. G., Mazilkin, A. A., Rabkin, E., Goll, D., Schütz, G., Baretzky, B., Valiev, R. Z.

{Journal of Materials Science}, 47, pages: 360-367, 2012 (article)

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DOI [BibTex]

DOI [BibTex]


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Nanosponges for hydrogen storage

Schlichtenmayer, M., Hirscher, M.

{Journal of Materials Chemistry}, 22, pages: 10134-10143, 2012 (article)

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DOI [BibTex]

DOI [BibTex]


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Magnetic and electronic properties of the interface between half metallic Fe3O4 and semiconducting ZnO

Brück, S., Paul, M., Tian, H., Müller, A., Kufer, D., Praetorius, C., Fauth, K., Audehm, P., Goering, E., Verbeeck, J., Van Tendeloo, G., Sing, M., Claessen, R.

{Applied Physics Letters}, 100, 2012 (article)

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DOI [BibTex]

DOI [BibTex]


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Amorphous interlayers between crystalline grains in ferromagnetic ZnO films

Straumal, B. B., Protasova, S. G., Mazilkin, A. A., Baretzky, B., Myatiev, A. A., Straumal, P. B., Tietze, T., Schütz, G., Goering, E.

{Materials Letters}, 71, pages: 21-24, 2012 (article)

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DOI [BibTex]

DOI [BibTex]


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Model-free reinforcement learning of impedance control in stochastic environments

Stulp, Freek, Buchli, Jonas, Ellmer, Alice, Mistry, Michael, Theodorou, Evangelos A., Schaal, S.

Autonomous Mental Development, IEEE Transactions on, 4(4):330-341, 2012 (article)

am

[BibTex]

[BibTex]


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Shape-Programmable Soft Capsule Robots for Semi-Implantable Drug Delivery

Yim, S., Sitti, M.

Mechatronics, IEEE/ASME Transactions on, 2012 (article)

pi

Project Page [BibTex]

Project Page [BibTex]


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Control of multiple heterogeneous magnetic microrobots in two dimensions on nonspecialized surfaces

Diller, E., Floyd, S., Pawashe, C., Sitti, M.

IEEE Transactions on Robotics, 28(1):172-182, IEEE, 2012 (article)

pi

[BibTex]

[BibTex]


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Gecko-Inspired Controllable Adhesive Structures Applied to Micromanipulation

Mengüç, Y., Yang, S. Y., Kim, S., Rogers, J. A., Sitti, M.

Advanced Functional Materials, 22(6):1245-1245, WILEY-VCH Verlag, 2012 (article)

pi

Project Page [BibTex]

Project Page [BibTex]


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Elastomer surfaces with directionally dependent adhesion strength and their use in transfer printing with continuous roll-to-roll applications

Yang, S. Y., Carlson, A., Cheng, H., Yu, Q., Ahmed, N., Wu, J., Kim, S., Sitti, M., Ferreira, P. M., Huang, Y., others,

Advanced Materials, 24(16):2117-2122, WILEY-VCH Verlag, 2012 (article)

pi

[BibTex]

[BibTex]


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Effect of retraction speed on adhesion of elastomer fibrillar structures

Abusomwan, U., Sitti, M.

Applied Physics Letters, 101(21):211907, AIP, 2012 (article)

pi

Project Page [BibTex]

Project Page [BibTex]


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Accelerated diffusion and phase transformations in Co-Cu alloys driven by the severe plastic deformation

Straumal, B. B., Mazilkin, A. A., Baretzky, B., Schütz, G., Rabkin, E., Valiev, R. Z.

{Special Issue on Advanced Materials Science in Bulk Nanostructured Metals}, 53(1):63-71, 2012 (article)

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DOI [BibTex]

DOI [BibTex]


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Unusual flux jumps above 12 K in non-homogeneous MgB2 thin films

Treiber, S., Stahl, C., Schütz, G., Albrecht, J.

{Superconductor Science \& Technology}, 25, 2012 (article)

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DOI [BibTex]

DOI [BibTex]


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Ferromagnetism of nanostructured zinc oxide films

Straumal, B. B., Mazilkin, A. A., Protasova, S. G., Straumal, P. B., Myatiev, A. A., Schütz, G., Goering, E., Baretzky, B.

{The Physics of Metals and Metallography}, 113(13):1244-1256, 2012 (article)

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DOI [BibTex]

DOI [BibTex]


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Frequencies and polarization vectors of phonons: Results from force constants which are fitted to experimental data or calculated ab initio

Illg, C., Meyer, B., Fähnle, M.

{Physical Review B}, 86(17), Published by the American Physical Society through the American Institute of Physics, Woodbury, NY, 2012 (article)

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DOI [BibTex]

DOI [BibTex]


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Grain boundary wetting by a second solid phase in the Zr-Nb alloys

Straumal, B. B., Gornakova, A. S., Kucheev, Y. O., Baretzky, B., Nekrasov, A. N.

{Journal of Materials Engineering and Performance}, 21(5):721-724, 2012 (article)

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DOI [BibTex]

DOI [BibTex]


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Grain boundary wetting in the NdFeB-based hard magnetic alloys

Straumal, B. B., Kucheev, Y. O., Yatskovskaya, I. L., Mogilnikova, I. V., Schütz, G., Nekrasov, A. N., Baretzky, B.

{Journal of Materials Science}, 47(24):8352-8359, 2012 (article)

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DOI [BibTex]

DOI [BibTex]


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Reinforcement Learning with Sequences of Motion Primitives for Robust Manipulation

Stulp, F., Theodorou, E., Schaal, S.

IEEE Transactions on Robotics, 2012 (article)

am

[BibTex]

[BibTex]


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Impact and Surface Tension in Water: a Study of Landing Bodies

Shih, B., Laham, L., Lee, K. J., Krasnoff, N., Diller, E., Sitti, M.

Bio-inspired Robotics Final Project, Carnegie Mellon University, 2012 (article)

pi

[BibTex]

[BibTex]


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Design and rolling locomotion of a magnetically actuated soft capsule endoscope

Yim, S., Sitti, M.

IEEE Transactions on Robotics, 28(1):183-194, IEEE, 2012 (article)

pi

Project Page [BibTex]

Project Page [BibTex]


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Design and manufacturing of a controllable miniature flapping wing robotic platform

Arabagi, V., Hines, L., Sitti, M.

The International Journal of Robotics Research, 31(6):785-800, SAGE Publications Sage UK: London, England, 2012 (article)

pi

[BibTex]

[BibTex]


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Chemotactic steering of bacteria propelled microbeads

Kim, D., Liu, A., Diller, E., Sitti, M.

Biomedical microdevices, 14(6):1009-1017, Springer US, 2012 (article)

pi

Project Page [BibTex]

Project Page [BibTex]


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Magnetic proximity effect in YBa2Cu3O7 / La2/3Ca1/3MnO3 and YBa2Cu3O7 / LaMnO3+δsuperlattices

Satapathy, D. K., Uribe-Laverde, M. A., Marozau, I., Malik, V. K., Das, S., Wagner, T., Marcelot, C., Stahn, J., Brück, S., Rühm, A., Macke, S., Tietze, T., Goering, E., Frañó, A., Kim, J., Wu, M., Benckiser, E., Keimer, B., Devishvili, A., Toperverg, B. P., Merz, M., Nagel, P., Schuppler, S., Bernhard, C.

{Physical Review Letters}, 108, 2012 (article)

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DOI [BibTex]

DOI [BibTex]


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Noble gases and microporous frameworks; from interaction to application

Soleimani Dorcheh, A., Denysenko, D., Volkmer, D., Donner, W., Hirscher, M.

{Microporous and Mesoporous Materials}, 162, pages: 64-68, Elsevier, Amsterdam, 2012 (article)

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DOI [BibTex]

DOI [BibTex]


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Note: Unique characterization possibilities in the ultra high vacuum scanning transmission x-ray microscope (UHV-STXM) "MAXYMUS" using a rotatable permanent magnetic field up to 0.22 T

Nolle, D., Weigand, M., Audehm, P., Goering, E., Wiesemann, U., Wolter, C., Nolle, E., Schütz, G.

{Review of Scientific Instruments}, 83(4), 2012 (article)

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DOI [BibTex]


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Microstructure and superconducting properties of MgB2 films prepared by solid state reaction of multilayer precursors of the elements

Kugler, B., Stahl, C., Treiber, S., Soltan, S., Haug, S., Schütz, G., Albrecht, J.

{Thin Solid Films}, 520, pages: 6985-6988, 2012 (article)

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DOI [BibTex]

DOI [BibTex]

2010


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Computationally efficient algorithms for statistical image processing: Implementation in R

Langovoy, M., Wittich, O.

(2010-053), EURANDOM, Technische Universiteit Eindhoven, December 2010 (techreport)

Abstract
In the series of our earlier papers on the subject, we proposed a novel statistical hy- pothesis testing method for detection of objects in noisy images. The method uses results from percolation theory and random graph theory. We developed algorithms that allowed to detect objects of unknown shapes in the presence of nonparametric noise of unknown level and of un- known distribution. No boundary shape constraints were imposed on the objects, only a weak bulk condition for the object's interior was required. Our algorithms have linear complexity and exponential accuracy. In the present paper, we describe an implementation of our nonparametric hypothesis testing method. We provide a program that can be used for statistical experiments in image processing. This program is written in the statistical programming language R.

ei

PDF [BibTex]

2010


PDF [BibTex]


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Fast Convergent Algorithms for Expectation Propagation Approximate Bayesian Inference

Seeger, M., Nickisch, H.

Max Planck Institute for Biological Cybernetics, December 2010 (techreport)

Abstract
We propose a novel algorithm to solve the expectation propagation relaxation of Bayesian inference for continuous-variable graphical models. In contrast to most previous algorithms, our method is provably convergent. By marrying convergent EP ideas from (Opper&Winther 05) with covariance decoupling techniques (Wipf&Nagarajan 08, Nickisch&Seeger 09), it runs at least an order of magnitude faster than the most commonly used EP solver.

ei

Web [BibTex]

Web [BibTex]


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Causal relationships between frequency bands of extracellular signals in visual cortex revealed by an information theoretic analysis

Besserve, M., Schölkopf, B., Logothetis, N., Panzeri, S.

Journal of Computational Neuroscience, 29(3):547-566, December 2010 (article)

ei

PDF DOI [BibTex]

PDF DOI [BibTex]


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Tackling Box-Constrained Optimization via a New Projected Quasi-Newton Approach

Kim, D., Sra, S., Dhillon, I.

SIAM Journal on Scientific Computing, 32(6):3548-3563 , December 2010 (article)

Abstract
Numerous scientific applications across a variety of fields depend on box-constrained convex optimization. Box-constrained problems therefore continue to attract research interest. We address box-constrained (strictly convex) problems by deriving two new quasi-Newton algorithms. Our algorithms are positioned between the projected-gradient [J. B. Rosen, J. SIAM, 8 (1960), pp. 181–217] and projected-Newton [D. P. Bertsekas, SIAM J. Control Optim., 20 (1982), pp. 221–246] methods. We also prove their convergence under a simple Armijo step-size rule. We provide experimental results for two particular box-constrained problems: nonnegative least squares (NNLS), and nonnegative Kullback–Leibler (NNKL) minimization. For both NNLS and NNKL our algorithms perform competitively as compared to well-established methods on medium-sized problems; for larger problems our approach frequently outperforms the competition.

ei

Web DOI [BibTex]

Web DOI [BibTex]


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Algorithmen zum Automatischen Erlernen von Motorfähigkeiten

Peters, J., Kober, J., Schaal, S.

at - Automatisierungstechnik, 58(12):688-694, December 2010 (article)

Abstract
Robot learning methods which allow autonomous robots to adapt to novel situations have been a long standing vision of robotics, artificial intelligence, and cognitive sciences. However, to date, learning techniques have yet to fulfill this promise as only few methods manage to scale into the high-dimensional domains of manipulator robotics, or even the new upcoming trend of humanoid robotics. If possible, scaling was usually only achieved in precisely pre-structured domains. In this paper, we investigate the ingredients for a general approach policy learning with the goal of an application to motor skill refinement in order to get one step closer towards human-like performance. For doing so, we study two major components for such an approach, i. e., firstly, we study policy learning algorithms which can be applied in the general setting of motor skill learning, and, secondly, we study a theoretically well-founded general approach to representing the required control structures for task representation and execution.

ei

Web DOI [BibTex]

Web DOI [BibTex]


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PAC-Bayesian Analysis of Co-clustering and Beyond

Seldin, Y., Tishby, N.

Journal of Machine Learning Research, 11, pages: 3595-3646, December 2010 (article)

ei

PDF PDF [BibTex]

PDF PDF [BibTex]


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Gaussian Processes for Machine Learning (GPML) Toolbox

Rasmussen, C., Nickisch, H.

Journal of Machine Learning Research, 11, pages: 3011-3015, November 2010 (article)

Abstract
The GPML toolbox provides a wide range of functionality for Gaussian process (GP) inference and prediction. GPs are specified by mean and covariance functions; we offer a library of simple mean and covariance functions and mechanisms to compose more complex ones. Several likelihood functions are supported including Gaussian and heavy-tailed for regression as well as others suitable for classification. Finally, a range of inference methods is provided, including exact and variational inference, Expectation Propagation, and Laplace's method dealing with non-Gaussian likelihoods and FITC for dealing with large regression tasks.

ei

Web [BibTex]

Web [BibTex]


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Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-Å resolution

Armache, J-P., Jarasch, A., Anger, AM., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Franckenberg, S., Marquez, V., Mielke, T., Thomm, M., Berninghausen, O., Beatrix, B., Söding, J., Westhof, E., Wilson, DN., Beckmann, R.

Proceedings of the National Academy of Sciences of the United States of America, 107(46):19748-19753, November 2010 (article)

Abstract
Protein biosynthesis, the translation of the genetic code into polypeptides, occurs on ribonucleoprotein particles called ribosomes. Although X-ray structures of bacterial ribosomes are available, high-resolution structures of eukaryotic 80S ribosomes are lacking. Using cryoelectron microscopy and single-particle reconstruction, we have determined the structure of a translating plant (Triticum aestivum) 80S ribosome at 5.5-Å resolution. This map, together with a 6.1-Å map of a Saccharomyces cerevisiae 80S ribosome, has enabled us to model ∼98% of the rRNA. Accurate assignment of the rRNA expansion segments (ES) and variable regions has revealed unique ES–ES and r-protein–ES interactions, providing insight into the structure and evolution of the eukaryotic ribosome.

ei

Web DOI [BibTex]

Web DOI [BibTex]