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2015


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Formation of a quasi-solid structure by intercalated noble gas atoms in pores of CuI-MFU-4l metal-organic framework

Magdysyuk, O. V., Denysenko, D., Weinrauch, I., Volkmer, D., Hirscher, M., Dinnebier, R. E.

{Chemical Communications}, 51(4):714-717, Royal Society of Chemistry, Cambridge, UK, 2015 (article)

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DOI [BibTex]

2015


DOI [BibTex]


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Burst-mode manipulation of magnonic vortex crystals

Hänze, M., Adolff, C. F., Weigand, M., Meier, G.

{Physical Review B}, 91(10), American Physical Society, Woodbury, NY, 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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Entropic Movement Complexity Reflects Subjective Creativity Rankings of Visualized Hand Motion Trajectories

Peng, Z, Braun, DA

Frontiers in Psychology, 6(1879):1-13, December 2015 (article)

Abstract
In a previous study we have shown that human motion trajectories can be characterized by translating continuous trajectories into symbol sequences with well-defined complexity measures. Here we test the hypothesis that the motion complexity individuals generate in their movements might be correlated to the degree of creativity assigned by a human observer to the visualized motion trajectories. We asked participants to generate 55 novel hand movement patterns in virtual reality, where each pattern had to be repeated 10 times in a row to ensure reproducibility. This allowed us to estimate a probability distribution over trajectories for each pattern. We assessed motion complexity not only by the previously proposed complexity measures on symbolic sequences, but we also propose two novel complexity measures that can be directly applied to the distributions over trajectories based on the frameworks of Gaussian Processes and Probabilistic Movement Primitives. In contrast to previous studies, these new methods allow computing complexities of individual motion patterns from very few sample trajectories. We compared the different complexity measures to how a group of independent jurors rank ordered the recorded motion trajectories according to their personal creativity judgment. We found three entropic complexity measures that correlate significantly with human creativity judgment and discuss differences between the measures. We also test whether these complexity measures correlate with individual creativity in divergent thinking tasks, but do not find any consistent correlation. Our results suggest that entropic complexity measures of hand motion may reveal domain-specific individual differences in kinesthetic creativity.

ei

DOI [BibTex]

DOI [BibTex]


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Bounded rationality, abstraction and hierarchical decision-making: an information-theoretic optimality principle

Genewein, T, Leibfried, F, Grau-Moya, J, Braun, DA

Frontiers in Robotics and AI, 2(27):1-24, October 2015 (article)

Abstract
Abstraction and hierarchical information-processing are hallmarks of human and animal intelligence underlying the unrivaled flexibility of behavior in biological systems. Achieving such a flexibility in artificial systems is challenging, even with more and more computational power. Here we investigate the hypothesis that abstraction and hierarchical information-processing might in fact be the consequence of limitations in information-processing power. In particular, we study an information-theoretic framework of bounded rational decision-making that trades off utility maximization against information-processing costs. We apply the basic principle of this framework to perception-action systems with multiple information-processing nodes and derive bounded optimal solutions. We show how the formation of abstractions and decision-making hierarchies depends on information-processing costs. We illustrate the theoretical ideas with example simulations and conclude by formalizing a mathematically unifying optimization principle that could potentially be extended to more complex systems.

ei

DOI [BibTex]

DOI [BibTex]


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Fabrication and X-ray testing of true kinoform lenses with high efficiencies

Keskinbora, K., Sanli, U., Grévent, C., Schütz, G.

{Proceedings of SPIE}, 9592, SPIE, Bellingham, Washington, 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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Signaling equilibria in sensorimotor interactions

Leibfried, F, Grau-Moya, J, Braun, DA

Cognition, 141, pages: 73-86, August 2015 (article)

Abstract
Although complex forms of communication like human language are often assumed to have evolved out of more simple forms of sensorimotor signaling, less attention has been devoted to investigate the latter. Here, we study communicative sensorimotor behavior of humans in a two-person joint motor task where each player controls one dimension of a planar motion. We designed this joint task as a game where one player (the sender) possesses private information about a hidden target the other player (the receiver) wants to know about, and where the sender's actions are costly signals that influence the receiver's control strategy. We developed a game-theoretic model within the framework of signaling games to investigate whether subjects' behavior could be adequately described by the corresponding equilibrium solutions. The model predicts both separating and pooling equilibria, in which signaling does and does not occur respectively. We observed both kinds of equilibria in subjects and found that, in line with model predictions, the propensity of signaling decreased with increasing signaling costs and decreasing uncertainty on the part of the receiver. Our study demonstrates that signaling games, which have previously been applied to economic decision-making and animal communication, provide a framework for human signaling behavior arising during sensorimotor interactions in continuous and dynamic environments.

ei

DOI [BibTex]

DOI [BibTex]


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Focused ion beam micromachining enables novel optics for X-ray microscopy

Keskinbora, K., Sanli, U., Grévent, C., Hirscher, M., Schütz, G.

{Microscopy and Microanalysis}, 21(Suppl 3):1983-1984, Springer-Verlag New York, New York, NY, 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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Selectable nanopattern arrays for nanolithographic imprint and etch-mask applications

Jeong, H., Mark, A. G., Lee, T., Son, K., Chen, W., Alarcón-Correa, M., Kim, I., Schütz, G., Fischer, P.

{Advanced Science}, 2(2), Wiley-VCH, Weinheim, 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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Grain boundaries as a source of ferromagnetism and increased solubility of Ni in nanograined ZnO

Straumal, B. B., Mazilkin, A. A., Protasova, S. G., Stakhanova, S. V., Straumal, P. B., Bulatov, M. F., Schütz, G., Tietze, T., Goering, E., Baretzky, B.

{Reviews on Advanced Materials Science}, 41, pages: 61-71, 2015 (article)

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[BibTex]

[BibTex]


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Gyrational modes of benzenelike magnetic vortex molecules

Adolff, C. F., Hänze, M., Pues, M., Weigand, M., Meier, G.

{Physical Review B}, 92(2), American Physical Society, Woodbury, NY, 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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"Job-Sharing" storage of hydrogen in Ru/Li2O nanocomposites

Fu, L., Tang, K., Oh, H., Kandavel, M., Bräuniger, T., Vinod Chandran, C., Menzel, A., Hirscher, M., Samuelis, D., Maier, J.

{Nano Letters}, 15(6):4170-4175, American Chemical Society, Washington, DC, 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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Overview of the multilayer-Fresnel zone plate and the kinoform lens development at MPI for Intelligent Systems

Sanli, U., Keskinbora, K., Grévent, C., Schütz, G.

{Proceedings of SPIE}, 9510, SPIE, Bellingham, Washington, 2015 (article)

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DOI [BibTex]


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Transition matrix elements for electron-phonon scattering: Phenomenological theory and ab initio electron theory

Illg, C., Haag, M., Müller, B. Y., Czycholl, G., Fähnle, M.

{Physical Review B}, 92(19), American Physical Society, Woodbury, NY, 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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Phase evolution in single-crystalline LiFePO4 followed by in situ scanning X-ray microscopy of a micrometre-sized battery

Ohmer, N., Fenk, B., Samuelis, D., Chen, C., Maier, J., Weigand, M., Goering, E., Schütz, G.

{Nature Communications}, 6, Nature Publishing Group, London, 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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Nitrogen-rich covalent triazine frameworks as high-performance platforms for selective carbon capture and storage

Hug, S., Stegbauer, L., Oh, H., Hirscher, M., Lotsch, B. V.

{Chemistry of Materials}, 27(23):8001-8010, American Chemical Society, Washington, D.C., 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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Novel plasticity rule can explain the development of sensorimotor intelligence

Der, R., Martius, G.

Proceedings of the National Academy of Sciences, 112(45):E6224-E6232, 2015 (article)

Abstract
Grounding autonomous behavior in the nervous system is a fundamental challenge for neuroscience. In particular, self-organized behavioral development provides more questions than answers. Are there special functional units for curiosity, motivation, and creativity? This paper argues that these features can be grounded in synaptic plasticity itself, without requiring any higher-level constructs. We propose differential extrinsic plasticity (DEP) as a new synaptic rule for self-learning systems and apply it to a number of complex robotic systems as a test case. Without specifying any purpose or goal, seemingly purposeful and adaptive rhythmic behavior is developed, displaying a certain level of sensorimotor intelligence. These surprising results require no system-specific modifications of the DEP rule. They rather arise from the underlying mechanism of spontaneous symmetry breaking, which is due to the tight brain body environment coupling. The new synaptic rule is biologically plausible and would be an interesting target for neurobiological investigation. We also argue that this neuronal mechanism may have been a catalyst in natural evolution.

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link (url) DOI Project Page [BibTex]

link (url) DOI Project Page [BibTex]


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Multilayer Fresnel zone plates for X-ray microscopy

Sanli, U. T., Keskinbora, K., Grévent, C., Szeghalmi, A., Knez, M., Schütz, G.

{Microscopy and Microanalysis}, 21(Suppl 3):1987-1988, Springer-Verlag New York, New York, NY, 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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Interfacial dominated ferromagnetism in nanograined ZnO: a \muSR and DFT study

Tietze, T., Audehm, P., Chen, Y., Schütz, G., Straumal, B. B., Protasova, S. G., Mazilkin, A. A., Straumal, P. B., Prokscha, T., Luetkens, H., Salman, Z., Suter, A., Baretzky, B., Fink, K., Wenzel, W., Danilov, D., Goering, E.

{Scientific Reports}, 5, pages: 8871-8876, Nature Publishing Group, London, UK, 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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Preparation of a ferromagnetic barrier in YBa2Cu3O7-delta thinner than the coherence length

Soltan, S., Albrecht, J., Goering, E., Schütz, G., Mustafa, L., Keimer, B., Habermeier, H.

{Journal of Applied Physics}, 118(22), AIP Publishing, New York, NY, 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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Microanalytical methods for in-situ high-resolution analysis of rock varnish at the micrometer to nanometer scale

Macholdt, D. S., Jochum, K. P., Pöhlker, C., Stoll, B., Weis, U., Weber, B., Müller, M., Kapl, M., Buhre, S., Kilcoyne, A. L. D., Weigand, M., Scholz, D., Al-Amri, A. M., Andreae, M. O.

{Chemical Geology}, 411, pages: 57-68, Elsevier, Amsterdam, 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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Chemical composition, microstructure, and hygroscopic properties of aerosol particles at the Zotino Tall Tower Observatory (ZOTTO), Siberia, during a summer campaign

Mikhailov, E. F., Mironov, G. N., Pöhlker, C., Chi, X., Krüger, M., Shiraiwa, M., Förster, J., Pöschl, U., Vlasenko, S. S., Ryshkevich, T. I., Weigand, M., Kilcoyne, A. L. D., Andreae, M.

{Atmospheric Chemistry and Physics}, 15(15):8847-8869, European Geosciences Union, Katlenburg-Lindau, Germany, 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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Orbital reflectometry of PrNiO3/PrAlO3 superlattices

Wu, M., Benckiser, E., Audehm, P., Goering, E., Wochner, P., Christiani, G., Logvenov, G., Habermeier, H., Keimer, B.

{Physical Review B}, 91(19), American Physical Society, Woodbury, NY, 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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Dynamic domain wall chirality rectification by rotating magnetic fields

Bisig, A., Mawass, M., Stärk, M., Moutafis, C., Rhensius, J., Heidler, J., Gliga, S., Weigand, M., Tyliszczak, T., Van Waeyenberge, B., Stoll, H., Schütz, G., Kläui, M.

{Applied Physics Letters}, 106(12), American Institute of Physics, Melville, NY, 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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Imaging spin dynamics on the nanoscale using X-ray microscopy

Stoll, H., Noske, M., Weigand, M., Richter, K., Krüger, B., Reeve, R. M., Hänze, M., Adolff, C. F., Stein, F., Meier, G., Kläui, M., Schütz, G.

{Frontiers in Physics}, 3, Frontiers Media, Lausanne, 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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Structure Learning in Bayesian Sensorimotor Integration

Genewein, T, Hez, E, Razzaghpanah, Z, Braun, DA

PLoS Computational Biology, 11(8):1-27, August 2015 (article)

Abstract
Previous studies have shown that sensorimotor processing can often be described by Bayesian learning, in particular the integration of prior and feedback information depending on its degree of reliability. Here we test the hypothesis that the integration process itself can be tuned to the statistical structure of the environment. We exposed human participants to a reaching task in a three-dimensional virtual reality environment where we could displace the visual feedback of their hand position in a two dimensional plane. When introducing statistical structure between the two dimensions of the displacement, we found that over the course of several days participants adapted their feedback integration process in order to exploit this structure for performance improvement. In control experiments we found that this adaptation process critically depended on performance feedback and could not be induced by verbal instructions. Our results suggest that structural learning is an important meta-learning component of Bayesian sensorimotor integration.

ei

DOI [BibTex]

DOI [BibTex]


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Unique high-temperature performance of highly consensed MnBi permanent magnets

Chen, Y., Gregori, G., Leineweber, A., Qu, F., Chen, C., Tietze, T., Kronmüller, H., Schütz, G., Goering, E.

{Scripta Materialia}, 107, pages: 131-135, Pergamon, Tarrytown, NY, 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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Quantifying Emergent Behavior of Autonomous Robots

Martius, G., Olbrich, E.

Entropy, 17(10):7266, 2015 (article)

al

link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Electrical determination of vortex state in submicron magnetic elements

Gangwar, A., Bauer, H. G., Chauleau, J., Noske, M., Weigand, M., Stoll, H., Schütz, G., Back, C. H.

{Physical Review B}, 91(9), American Physical Society, Woodbury, NY, 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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Mechanisms for the symmetric and antisymmetric switching of a magnetic vortex core: Differences and common aspects

Noske, M., Stoll, H., Fähnle, M., Hertel, R., Schütz, G.

{Physical Review B}, 91(1), American Physical Society, Woodbury, NY, 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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High resolution, high efficiency mulitlayer Fresnel zone plates for soft and hard X-rays

Sanli, U., Keskinbora, K., Gregorczyk, K., Leister, J., Teeny, N., Grévent, C., Knez, M., Schütz, G.

{Proceedings of SPIE}, 9592, SPIE, Bellingham, Washington, 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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Macroscopic drift current in the inverse Faraday effect

Hertel, R., Fähnle, M.

{Physical Review B}, 91(2), American Physical Society, Woodbury, NY, 2015 (article)

mms

DOI [BibTex]

DOI [BibTex]


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Single-step 3D nanofabrication of kinoform optics via gray-scale focused ion beam lithography for efficient X-ray focusing

Keskinbora, K., Grévent, C., Hirscher, M., Weigand, M., Schütz, G.

{Advanced Optical Materials}, 3, pages: 792-800, WILEY-VCH Verlag GmbH Co. KGaA, Weinheim, 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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Band structure engineering of two-dimensional magnonic vortex crystals

Behncke, C., Hänze, M., Adolff, C. F., Weigand, M., Meier, G.

{Physical Review B}, 91(22), American Physical Society, Woodbury, NY, 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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Towards denoising XMCD movies of fast magnetization dynamics using extended Kalman filter

Kopp, M., Harmeling, S., Schütz, G., Schölkopf, B., Fähnle, M.

{Ultramicroscopy}, 148, pages: 115-122, North-Holland, Amsterdam, 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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A Reward-Maximizing Spiking Neuron as a Bounded Rational Decision Maker

Leibfried, F, Braun, DA

Neural Computation, 27(8):1686-1720, July 2015 (article)

Abstract
Rate distortion theory describes how to communicate relevant information most efficiently over a channel with limited capacity. One of the many applications of rate distortion theory is bounded rational decision making, where decision makers are modeled as information channels that transform sensory input into motor output under the constraint that their channel capacity is limited. Such a bounded rational decision maker can be thought to optimize an objective function that trades off the decision maker's utility or cumulative reward against the information processing cost measured by the mutual information between sensory input and motor output. In this study, we interpret a spiking neuron as a bounded rational decision maker that aims to maximize its expected reward under the computational constraint that the mutual information between the neuron's input and output is upper bounded. This abstract computational constraint translates into a penalization of the deviation between the neuron's instantaneous and average firing behavior. We derive a synaptic weight update rule for such a rate distortion optimizing neuron and show in simulations that the neuron efficiently extracts reward-relevant information from the input by trading off its synaptic strengths against the collected reward.

ei

DOI [BibTex]

DOI [BibTex]


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Magnetic moments induce strong phonon renormalization in FeSi

Krannich, S., Sidis, Y., Lamago, D., Heid, R., Mignot, J., von Löhneysen, H., Ivanov, A., Steffens, P., Keller, T., Wang, L., Goering, E., Weber, F.

{Nature Communications}, 6, Nature Publishing Group, London, 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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What is epistemic value in free energy models of learning and acting? A bounded rationality perspective

Ortega, PA, Braun, DA

Cognitive Neuroscience, 6(4):215-216, December 2015 (article)

Abstract
Free energy models of learning and acting do not only care about utility or extrinsic value, but also about intrinsic value, that is, the information value stemming from probability distributions that represent beliefs or strategies. While these intrinsic values can be interpreted as epistemic values or exploration bonuses under certain conditions, the framework of bounded rationality offers a complementary interpretation in terms of information-processing costs that we discuss here.

ei

DOI [BibTex]

DOI [BibTex]


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Perpendicular magnetisation from in-plane fields in nano-scaled antidot lattices

Gräfe, J., Haering, F., Tietze, T., Audehm, P., Weigand, M., Wiedwald, U., Ziemann, P., Gawronski, P., Schütz, G., Goering, E. J.

{Nanotechnology}, 26(22), IOP Pub., Bristol, UK, 2015 (article)

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DOI Project Page [BibTex]

DOI Project Page [BibTex]


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Theory of ultrafast demagnetization after femtosecond laser pulses

Fähnle, M., Illg, C., Haag, M., Teeny, N.

{Acta Physica Polonica A}, 127(2):170-175, Państwowe Wydawnictwo Naukowe, Warszawa, 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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Non-linear radial spinwave modes in thin magnetic disks

Helsen, M., Gangwar, Ajay, De Clercq, J., Vansteenkiste, A., Weigand, M., Back, C. H., Van Waeyenberge, B.

{Applied Physics Letters}, 106(3), American Institute of Physics, Melville, NY, 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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Hydrogen isotope separation in metal-organic frameworks: Kinetic or chemical affinity quantum-sieving?

Savchenko, I., Mavrandonakis, A., Heine, T., Oh, H., Teufel, J., Hirscher, M.

{Microporous and Mesoporous Materials}, 216, pages: 133-137, Elsevier, Amsterdam, 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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High-resolution dichroic imaging of magnetic flux distributions in superconductors with scanning x-ray microscopy

Ruoß, S., Stahl, C., Weigand, M., Schütz, G., Albrecht, J.

{Applied Physics Letters}, 106, American Institute of Physics, Melville, NY, 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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Preparation and characterisation of epitaxial Pt/Cu/FeMn/Co thin films on (100)-oriented MgO single crystals

Schmidt, M., Gräfe, J., Audehm, P., Phillipp, F., Schütz, G., Goering, E.

{Physica Status Solidi A}, 212(10):2114-2123, Wiley-VCH, Weinheim, 2015 (article)

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DOI [BibTex]

DOI [BibTex]


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Probing the magnetic moments of [MnIII6CrIII]3+ single-molecule magnets - A cross comparison of XMCD and spin-resolved electron spectroscopy

Helmstedt, A., Dohmeier, N., Müller, N., Gryzia, A., Brechling, A., Heinzmann, U., Hoeke, V., Krickemeyer, E., Glaser, T., Leicht, P., Fonin, M., Tietze, T., Joly, L., Kuepper, K.

{Journal of Electron Spectroscopy and Related Phenomena}, 198, pages: 12-19, Elsevier B.V., Amsterdam, 2015 (article)

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DOI [BibTex]

DOI [BibTex]

2012


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Jensen-Bregman LogDet Divergence with Application to Efficient Similarity Search for Covariance Matrices

Cherian, A., Sra, S., Banerjee, A., Papanikolopoulos, N.

IEEE Transactions on Pattern Analysis and Machine Intelligence, 35(9):2161-2174, December 2012 (article)

ei

DOI [BibTex]

2012


DOI [BibTex]


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Hippocampal-Cortical Interaction during Periods of Subcortical Silence

Logothetis, N., Eschenko, O., Murayama, Y., Augath, M., Steudel, T., Evrard, H., Besserve, M., Oeltermann, A.

Nature, 491, pages: 547-553, November 2012 (article)

Abstract
Hippocampal ripples, episodic high-frequency field-potential oscillations primarily occurring during sleep and calmness, have been described in mice, rats, rabbits, monkeys and humans, and so far they have been associated with retention of previously acquired awake experience. Although hippocampal ripples have been studied in detail using neurophysiological methods, the global effects of ripples on the entire brain remain elusive, primarily owing to a lack of methodologies permitting concurrent hippocampal recordings and whole-brain activity mapping. By combining electrophysiological recordings in hippocampus with ripple-triggered functional magnetic resonance imaging, here we show that most of the cerebral cortex is selectively activated during the ripples, whereas most diencephalic, midbrain and brainstem regions are strongly and consistently inhibited. Analysis of regional temporal response patterns indicates that thalamic activity suppression precedes the hippocampal population burst, which itself is temporally bounded by massive activations of association and primary cortical areas. These findings suggest that during off-line memory consolidation, synergistic thalamocortical activity may be orchestrating a privileged interaction state between hippocampus and cortex by silencing the output of subcortical centres involved in sensory processing or potentially mediating procedural learning. Such a mechanism would cause minimal interference, enabling consolidation of hippocampus-dependent memory.

ei

Web DOI [BibTex]

Web DOI [BibTex]


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Thermodynamic limits of dynamic cooling

Allahverdyan, A., Hovhannisyan, K., Janzing, D., Mahler, G.

Physical Review E, 84(4):16, October 2012 (article)

Abstract
We study dynamic cooling, where an externally driven two-level system is cooled via reservoir, a quantum system with initial canonical equilibrium state. We obtain explicitly the minimal possible temperature Tmin>0 reachable for the two-level system. The minimization goes over all unitary dynamic processes operating on the system and reservoir and over the reservoir energy spectrum. The minimal work needed to reach Tmin grows as 1/Tmin. This work cost can be significantly reduced, though, if one is satisfied by temperatures slightly above Tmin. Our results on Tmin>0 prove unattainability of the absolute zero temperature without ambiguities that surround its derivation from the entropic version of the third law. We also study cooling via a reservoir consisting of N≫1 identical spins. Here we show that Tmin∝1/N and find the maximal cooling compatible with the minimal work determined by the free energy. Finally we discuss cooling by reservoir with an initially microcanonic state and show that although a purely microcanonic state can yield the zero temperature, the unattainability is recovered when taking into account imperfections in preparing the microcanonic state.

ei

Web DOI [BibTex]

Web DOI [BibTex]


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Coupled Action Recognition and Pose Estimation from Multiple Views

Yao, A., Gall, J., van Gool, L.

International Journal of Computer Vision, 100(1):16-37, October 2012 (article)

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publisher's site code pdf Project Page Project Page Project Page [BibTex]

publisher's site code pdf Project Page Project Page Project Page [BibTex]


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GLIDE: GPU-Based Linear Regression for Detection of Epistasis

Kam-Thong, T., Azencott, C., Cayton, L., Pütz, B., Altmann, A., Karbalai, N., Sämann, P., Schölkopf, B., Müller-Myhsok, B., Borgwardt, K.

Human Heredity, 73(4):220-236, September 2012 (article)

Abstract
Due to recent advances in genotyping technologies, mapping phenotypes to single loci in the genome has become a standard technique in statistical genetics. However, one-locus mapping fails to explain much of the phenotypic variance in complex traits. Here, we present GLIDE, which maps phenotypes to pairs of genetic loci and systematically searches for the epistatic interactions expected to reveal part of this missing heritability. GLIDE makes use of the computational power of consumer-grade graphics cards to detect such interactions via linear regression. This enabled us to conduct a systematic two-locus mapping study on seven disease data sets from the Wellcome Trust Case Control Consortium and on in-house hippocampal volume data in 6 h per data set, while current single CPU-based approaches require more than a year’s time to complete the same task.

ei

Web [BibTex]

Web [BibTex]