Header logo is


2006


no image
Prediction of Protein Function from Networks

Shin, H., Tsuda, K.

In Semi-Supervised Learning, pages: 361-376, Adaptive Computation and Machine Learning, (Editors: Chapelle, O. , B. Schölkopf, A. Zien), MIT Press, Cambridge, MA, USA, November 2006 (inbook)

Abstract
In computational biology, it is common to represent domain knowledge using graphs. Frequently there exist multiple graphs for the same set of nodes, representing information from different sources, and no single graph is sufficient to predict class labels of unlabelled nodes reliably. One way to enhance reliability is to integrate multiple graphs, since individual graphs are partly independent and partly complementary to each other for prediction. In this chapter, we describe an algorithm to assign weights to multiple graphs within graph-based semi-supervised learning. Both predicting class labels and searching for weights for combining multiple graphs are formulated into one convex optimization problem. The graph-combining method is applied to functional class prediction of yeast proteins.When compared with individual graphs, the combined graph with optimized weights performs significantly better than any single graph.When compared with the semidefinite programming-based support vector machine (SDP/SVM), it shows comparable accuracy in a remarkably short time. Compared with a combined graph with equal-valued weights, our method could select important graphs without loss of accuracy, which implies the desirable property of integration with selectivity.

ei

Web [BibTex]

2006


Web [BibTex]


no image
Discrete Regularization

Zhou, D., Schölkopf, B.

In Semi-supervised Learning, pages: 237-250, Adaptive computation and machine learning, (Editors: O Chapelle and B Schölkopf and A Zien), MIT Press, Cambridge, MA, USA, November 2006 (inbook)

Abstract
Many real-world machine learning problems are situated on finite discrete sets, including dimensionality reduction, clustering, and transductive inference. A variety of approaches for learning from finite sets has been proposed from different motivations and for different problems. In most of those approaches, a finite set is modeled as a graph, in which the edges encode pairwise relationships among the objects in the set. Consequently many concepts and methods from graph theory are adopted. In particular, the graph Laplacian is widely used. In this chapter we present a systemic framework for learning from a finite set represented as a graph. We develop discrete analogues of a number of differential operators, and then construct a discrete analogue of classical regularization theory based on those discrete differential operators. The graph Laplacian based approaches are special cases of this general discrete regularization framework. An important thing implied in this framework is that we have a wide choices of regularization on graph in addition to the widely-used graph Laplacian based one.

ei

PDF Web [BibTex]

PDF Web [BibTex]


no image
Extraction of visual features from natural video data using Slow Feature Analysis

Nickisch, H.

Biologische Kybernetik, Technische Universität Berlin, Berlin, Germany, September 2006 (diplomathesis)

Abstract
Das Forschungsprojekt NeuRoBot hat das un{\"u}berwachte Erlernen einer neuronal inspirierten Steuerungsarchitektur zum Ziel, und zwar unter den Randbedingungen biologischer Plausibilit{\"a}t und der Benutzung einer Kamera als einzigen Sensor. Visuelle Merkmale, die ein angemessenes Abbild der Umgebung liefern, sind unerl{\"a}sslich, um das Ziel kollisionsfreier Navigation zu erreichen. Zeitliche Koh{\"a}renz ist ein neues Lernprinzip, das in der Lage ist, Erkenntnisse aus der Biologie des Sehens zu reproduzieren. Es wird durch die Beobachtung motiviert, dass die “Sensoren” der Retina auf deutlich k{\"u}rzeren Zeitskalen variieren als eine abstrakte Beschreibung. Zeitliche Langsamkeitsanalyse l{\"o}st das Problem, indem sie zeitlich langsam ver{\"a}nderliche Signale aus schnell ver{\"a}nderlichen Eingabesignalen extrahiert. Eine Verallgemeinerung auf Signale, die nichtlinear von den Eingaben abh{\"a}ngen, ist durch die Anwendung des Kernel-Tricks m{\"o}glich. Das einzig benutzte Vorwissen ist die zeitliche Glattheit der gewonnenen Signale. In der vorliegenden Diplomarbeit wird Langsamkeitsanalyse auf Bildausschnitte von Videos einer Roboterkamera und einer Simulationsumgebung angewendet. Zuallererst werden mittels Parameterexploration und Kreuzvalidierung die langsamst m{\"o}glichen Funktionen bestimmt. Anschließend werden die Merkmalsfunktionen analysiert und einige Ansatzpunkte f{\"u}r ihre Interpretation angegeben. Aufgrund der sehr großen Datens{\"a}tze und der umfangreichen Berechnungen behandelt ein Großteil dieser Arbeit auch Aufwandsbetrachtungen und Fragen der effizienten Berechnung. Kantendetektoren in verschiedenen Phasen und mit haupts{\"a}chlich horizontaler Orientierung stellen die wichtigsten aus der Analyse hervorgehenden Funktionen dar. Eine Anwendung auf konkrete Navigationsaufgaben des Roboters konnte bisher nicht erreicht werden. Eine visuelle Interpretation der erlernten Merkmale ist jedoch durchaus gegeben.

ei

PDF [BibTex]

PDF [BibTex]


no image
An Online-Computation Approach to Optimal Finite-Horizon State-Feedback Control of Nonlinear Stochastic Systems

Deisenroth, MP.

Biologische Kybernetik, Universität Karlsruhe (TH), Karlsruhe, Germany, August 2006 (diplomathesis)

ei

PDF [BibTex]

PDF [BibTex]


no image
Object Classification using Local Image Features

Nowozin, S.

Biologische Kybernetik, Technical University of Berlin, Berlin, Germany, May 2006 (diplomathesis)

Abstract
Object classification in digital images remains one of the most challenging tasks in computer vision. Advances in the last decade have produced methods to repeatably extract and describe characteristic local features in natural images. In order to apply machine learning techniques in computer vision systems, a representation based on these features is needed. A set of local features is the most popular representation and often used in conjunction with Support Vector Machines for classification problems. In this work, we examine current approaches based on set representations and identify their shortcomings. To overcome these shortcomings, we argue for extending the set representation into a graph representation, encoding more relevant information. Attributes associated with the edges of the graph encode the geometric relationships between individual features by making use of the meta data of each feature, such as the position, scale, orientation and shape of the feature region. At the same time all invariances provided by the original feature extraction method are retained. To validate the novel approach, we use a standard subset of the ETH-80 classification benchmark.

ei

PDF [BibTex]

PDF [BibTex]


no image
Kernel PCA for Image Compression

Huhle, B.

Biologische Kybernetik, Eberhard-Karls-Universität, Tübingen, Germany, April 2006 (diplomathesis)

ei

PDF [BibTex]

PDF [BibTex]


no image
Gaussian Process Models for Robust Regression, Classification, and Reinforcement Learning

Kuss, M.

Biologische Kybernetik, Technische Universität Darmstadt, Darmstadt, Germany, March 2006, passed with distinction, published online (phdthesis)

ei

PDF [BibTex]

PDF [BibTex]


no image
Semigroups applied to transport and queueing processes

Radl, A.

Biologische Kybernetik, Eberhard Karls Universität, Tübingen, 2006 (phdthesis)

ei

PDF [BibTex]

PDF [BibTex]


no image
Local Alignment Kernels for Protein Homology Detection

Saigo, H.

Biologische Kybernetik, Kyoto University, Kyoto, Japan, 2006 (phdthesis)

ei

[BibTex]

[BibTex]


no image
Combining a Filter Method with SVMs

Lal, T., Chapelle, O., Schölkopf, B.

In Feature Extraction: Foundations and Applications, Studies in Fuzziness and Soft Computing, Vol. 207, pages: 439-446, Studies in Fuzziness and Soft Computing ; 207, (Editors: I Guyon and M Nikravesh and S Gunn and LA Zadeh), Springer, Berlin, Germany, 2006 (inbook)

Abstract
Our goal for the competition (feature selection competition NIPS 2003) was to evaluate the usefulness of simple machine learning techniques. We decided to use the correlation criteria as a feature selection method and Support Vector Machines for the classification part. Here we explain how we chose the regularization parameter C of the SVM, how we determined the kernel parameter and how we estimated the number of features used for each data set. All analyzes were carried out on the training sets of the competition data. We choose the data set Arcene as an example to explain the approach step by step. In our view the point of this competition was the construction of a well performing classifier rather than the systematic analysis of a specific approach. This is why our search for the best classifier was only guided by the described methods and that we deviated from the road map at several occasions. All calculations were done with the software Spider [2004].

ei

PDF DOI [BibTex]

PDF DOI [BibTex]


no image
Embedded methods

Lal, T., Chapelle, O., Weston, J., Elisseeff, A.

In Feature Extraction: Foundations and Applications, pages: 137-165, Studies in Fuzziness and Soft Computing ; 207, (Editors: Guyon, I. , S. Gunn, M. Nikravesh, L. A. Zadeh), Springer, Berlin, Germany, 2006 (inbook)

Abstract
Embedded methods are a relatively new approach to feature selection. Unlike filter methods, which do not incorporate learning, and wrapper approaches, which can be used with arbitrary classifiers, in embedded methods the features selection part can not be separated from the learning part. Existing embedded methods are reviewed based on a unifying mathematical framework.

ei

PDF Web [BibTex]

PDF Web [BibTex]


NONLINEAR OPTICAL PROPERTIES OF CHIRAL LIQUIDS Electric-dipolar pseudoscalars in nonlinear optics
NONLINEAR OPTICAL PROPERTIES OF CHIRAL LIQUIDS Electric-dipolar pseudoscalars in nonlinear optics

Fischer, P., Champagne, B.

In NON-LINEAR OPTICAL PROPERTIES OF MATTER: FROM MOLECULES TO CONDENSED PHASES, 1, pages: 359-381, Challenges and Advances in Computational Chemistry and Physics, 2006 (incollection)

Abstract
We give all overview of linear and nonlinear optical processes that can be specific to chiral molecules in isotropic media. Specifically, we discuss the pseudoscalars that underlie nonlinear optical activity and chiral frequency conversion processes in fluids. We show that nonlinear optical techniques open entirely new ways of exploring chirality: Sum-frequency-generation (SFG) at second-order and BioCARS at fourth-order arise in the electric-dipole approximation and do not require circularly polarized light to detect chiral molecules in solution. Here the frequency conversion in itself is a measure of chirality. This is in contrast to natural optical activity phenomena which are based on the interference of radiation from induced oscillating electric and magnetic dipoles, and which are observed as a differential response to right and left circularly polarized light. We give examples from our SFG experiments in optically active solutions and show how the application of an additional static electric field to sum-frequency generation allows the absolute configuration of the chiral solute to be determined via all electric-dipolar process. Results from ab initio calculations of the SFG pseudoscalar are presented for a number of chiral molecules

pf

[BibTex]

[BibTex]


no image
Elektronentheorie der magnetischen EXAFS

Gü\ssmann, M.

Universität Stuttgart, Stuttgart, 2006 (mastersthesis)

mms

[BibTex]

[BibTex]


no image
Approximate nearest neighbor regression in very high dimensions

Vijayakumar, S., DSouza, A., Schaal, S.

In Nearest-Neighbor Methods in Learning and Vision, pages: 103-142, (Editors: Shakhnarovich, G.;Darrell, T.;Indyk, P.), Cambridge, MA: MIT Press, 2006, clmc (inbook)

am

link (url) [BibTex]

link (url) [BibTex]


no image
Elektronenspektroskopie an Übergangsmetallclustern

He\ssler, M.

Bayerische Julius-Maximilians-Universität, Würzburg, 2006 (phdthesis)

mms

[BibTex]

[BibTex]


no image
Hydrogen storage by physisorption on porous materials

Panella, B.

Universität Stuttgart, Stuttgart, 2006 (phdthesis)

mms

link (url) [BibTex]

link (url) [BibTex]


no image
Theory of magnetic x-ray reflectometry on the Co2Pt7 multilayer system

Martosiswoyo, L.

Universität Stuttgart, Stuttgart, 2006 (mastersthesis)

mms

[BibTex]

[BibTex]


no image
Magnetischer zirkularer Röntgendichroismus an Übergangsmetalloxiden

Lafkioti, M.

Universität Stuttgart, Stuttgart, 2006 (mastersthesis)

mms

[BibTex]

[BibTex]


no image
Contributions to the theory of x-ray magnetic dichroism

Dörfler, F.

Universität Stuttgart, Stuttgart, 2006 (mastersthesis)

mms

[BibTex]

[BibTex]


Products of ``Edge-perts''
Products of “Edge-perts”

Gehler, P., Welling, M.

In Advances in Neural Information Processing Systems 18, pages: 419-426, (Editors: Weiss, Y. and Sch"olkopf, B. and Platt, J.), MIT Press, Cambridge, MA, 2006 (incollection)

ps

pdf [BibTex]

pdf [BibTex]

2001


no image
Variationsverfahren zur Untersuchung von Grundzustandseigenschaften des Ein-Band Hubbard-Modells

Eichhorn, J.

Biologische Kybernetik, Technische Universität Dresden, Dresden/Germany, May 2001 (diplomathesis)

Abstract
Using different modifications of a new variational approach, statical groundstate properties of the one-band Hubbard model such as energy and staggered magnetisation are calculated. By taking into account additional fluctuations, the method ist gradually improved so that a very good description of the energy in one and two dimensions can be achieved. After a detailed discussion of the application in one dimension, extensions for two dimensions are introduced. By use of a modified version of the variational ansatz in particular a description of the quantum phase transition for the magnetisation should be possible.

ei

PostScript [BibTex]

2001


PostScript [BibTex]


no image
Cerebellar Control of Robot Arms

Peters, J.

Biologische Kybernetik, Technische Univeristät München, München, Germany, 2001 (diplomathesis)

ei

[BibTex]

[BibTex]


no image
On Unsupervised Learning of Mixtures of Markov Sources

Seldin, Y.

Biologische Kybernetik, The Hebrew University of Jerusalem, Israel, 2001 (diplomathesis)

ei

PDF [BibTex]

PDF [BibTex]


no image
Extracting egomotion from optic flow: limits of accuracy and neural matched filters

Dahmen, H-J., Franz, MO., Krapp, HG.

In pages: 143-168, Springer, Berlin, 2001 (inbook)

ei

[BibTex]

[BibTex]


no image
Support Vector Machines: Theorie und Anwendung auf Prädiktion epileptischer Anfälle auf der Basis von EEG-Daten

Lal, TN.

Biologische Kybernetik, Institut für Angewandte Mathematik, Universität Bonn, 2001, Advised by Prof. Dr. S. Albeverio (diplomathesis)

ei

ZIP [BibTex]

ZIP [BibTex]


no image
Kritische Ströme über Kleinwinkelkorngrenzen in YBCO

Albrecht, J.

Universität Stuttgart, Stuttgart, 2001 (phdthesis)

mms

[BibTex]

[BibTex]


no image
Von der elektronischen Struktur zum makroskopischen Verhalten: Eine Multi-Skalen Analyse der Plastizität

Kohlhammer, S.

Universität Stuttgart, Stuttgart, 2001 (phdthesis)

mms

[BibTex]


no image
Influence of grain boundary phase transitions on the properties of Cu-Bi polycrystals

Straumal, B. B., Sluchanko, N.E., Gust, W.

In Defects and Diffusion in Metals III: An Annual Retrospective III, 188-1, pages: 185-194, Defect and Diffusion Forum, 2001 (incollection)

mms

[BibTex]

[BibTex]


no image
Kernspinresonanzuntersuchungen zur Diffusion von Wasserstoff in den Di- und Trihydriden der Übergangsmetalle

Gottwald, J.

Universität Stuttgart, Stuttgart, 2001 (phdthesis)

mms

[BibTex]

1997


Recognizing human motion using parameterized models of optical flow
Recognizing human motion using parameterized models of optical flow

Black, M. J., Yacoob, Y., Ju, X. S.

In Motion-Based Recognition, pages: 245-269, (Editors: Mubarak Shah and Ramesh Jain,), Kluwer Academic Publishers, Boston, MA, 1997 (incollection)

ps

pdf [BibTex]

1997


pdf [BibTex]