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2016


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Contextual Policy Search for Linear and Nonlinear Generalization of a Humanoid Walking Controller

Abdolmaleki, A., Lau, N., Reis, L., Peters, J., Neumann, G.

Journal of Intelligent & Robotic Systems, 83(3-4):393-408, (Editors: Luis Almeida, Lino Marques ), September 2016, Special Issue: Autonomous Robot Systems (article)

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DOI [BibTex]

2016


DOI [BibTex]


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Acquiring and Generalizing the Embodiment Mapping from Human Observations to Robot Skills

Maeda, G., Ewerton, M., Koert, D., Peters, J.

IEEE Robotics and Automation Letters, 1(2):784-791, July 2016 (article)

ei

DOI [BibTex]

DOI [BibTex]


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Autofocusing-based correction of B0 fluctuation-induced ghosting

Loktyushin, A., Ehses, P., Schölkopf, B., Scheffler, K.

24th Annual Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine (ISMRM), May 2016 (poster)

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link (url) [BibTex]

link (url) [BibTex]


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On estimation of functional causal models: General results and application to post-nonlinear causal model

Zhang, K., Wang, Z., Zhang, J., Schölkopf, B.

ACM Transactions on Intelligent Systems and Technologies, 7(2):article no. 13, January 2016 (article)

ei

PDF DOI [BibTex]

PDF DOI [BibTex]


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Gaussian Process-Based Predictive Control for Periodic Error Correction

Klenske, E. D., Zeilinger, M., Schölkopf, B., Hennig, P.

IEEE Transactions on Control Systems Technology , 24(1):110-121, 2016 (article)

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PDF DOI [BibTex]

PDF DOI [BibTex]


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Pymanopt: A Python Toolbox for Optimization on Manifolds using Automatic Differentiation

Townsend, J., Koep, N., Weichwald, S.

Journal of Machine Learning Research, 17(137):1-5, 2016 (article)

ei

PDF Arxiv Code Project page link (url) [BibTex]


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A Causal, Data-driven Approach to Modeling the Kepler Data

Wang, D., Hogg, D. W., Foreman-Mackey, D., Schölkopf, B.

Publications of the Astronomical Society of the Pacific, 128(967):094503, 2016 (article)

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link (url) DOI Project Page [BibTex]

link (url) DOI Project Page [BibTex]


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Probabilistic Inference for Determining Options in Reinforcement Learning

Daniel, C., van Hoof, H., Peters, J., Neumann, G.

Machine Learning, Special Issue, 104(2):337-357, (Editors: Gärtner, T., Nanni, M., Passerini, A. and Robardet, C.), European Conference on Machine Learning im Machine Learning, Journal Track, 2016, Best Student Paper Award of ECML-PKDD 2016 (article)

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DOI Project Page [BibTex]

DOI Project Page [BibTex]


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PGO wave-triggered functional MRI: mapping the networks underlying synaptic consolidation

Logothetis, N. K., Murayama, Y., Ramirez-Villegas, J. F., Besserve, M., Evrard, H.

47th Annual Meeting of the Society for Neuroscience (Neuroscience), 2016 (poster)

ei

[BibTex]

[BibTex]


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Influence of initial fixation position in scene viewing

Rothkegel, L. O. M., Trukenbrod, H. A., Schütt, H. H., Wichmann, F. A., Engbert, R.

Vision Research, 129, pages: 33-49, 2016 (article)

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link (url) DOI Project Page [BibTex]

link (url) DOI Project Page [BibTex]


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Testing models of peripheral encoding using metamerism in an oddity paradigm

Wallis, T. S. A., Bethge, M., Wichmann, F. A.

Journal of Vision, 16(2), 2016 (article)

ei

DOI Project Page [BibTex]

DOI Project Page [BibTex]


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Modeling Confounding by Half-Sibling Regression

Schölkopf, B., Hogg, D., Wang, D., Foreman-Mackey, D., Janzing, D., Simon-Gabriel, C. J., Peters, J.

Proceedings of the National Academy of Science, 113(27):7391-7398, 2016 (article)

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Code link (url) DOI Project Page [BibTex]

Code link (url) DOI Project Page [BibTex]


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Dual Control for Approximate Bayesian Reinforcement Learning

Klenske, E. D., Hennig, P.

Journal of Machine Learning Research, 17(127):1-30, 2016 (article)

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PDF link (url) [BibTex]

PDF link (url) [BibTex]


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A Population Based Gaussian Mixture Model Incorporating 18F-FDG-PET and DW-MRI Quantifies Tumor Tissue Classes

Divine, M. R., Katiyar, P., Kohlhofer, U., Quintanilla-Martinez, L., Disselhorst, J. A., Pichler, B. J.

Journal of Nuclear Medicine, 57(3):473-479, 2016 (article)

ei

DOI [BibTex]

DOI [BibTex]


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Probabilistic Duality for Parallel Gibbs Sampling without Graph Coloring

Mescheder, L., Nowozin, S., Geiger, A.

Arxiv, 2016 (article)

Abstract
We present a new notion of probabilistic duality for random variables involving mixture distributions. Using this notion, we show how to implement a highly-parallelizable Gibbs sampler for weakly coupled discrete pairwise graphical models with strictly positive factors that requires almost no preprocessing and is easy to implement. Moreover, we show how our method can be combined with blocking to improve mixing. Even though our method leads to inferior mixing times compared to a sequential Gibbs sampler, we argue that our method is still very useful for large dynamic networks, where factors are added and removed on a continuous basis, as it is hard to maintain a graph coloring in this setup. Similarly, our method is useful for parallelizing Gibbs sampling in graphical models that do not allow for graph colorings with a small number of colors such as densely connected graphs.

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pdf [BibTex]


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Painfree and accurate Bayesian estimation of psychometric functions for (potentially) overdispersed data

Schütt, H. H., Harmeling, S., Macke, J. H., Wichmann, F. A.

Vision Research, 122, pages: 105-123, 2016 (article)

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link (url) DOI Project Page [BibTex]

link (url) DOI Project Page [BibTex]


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Hierarchical Relative Entropy Policy Search

Daniel, C., Neumann, G., Kroemer, O., Peters, J.

Journal of Machine Learning Research, 17(93):1-50, 2016 (article)

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link (url) Project Page [BibTex]

link (url) Project Page [BibTex]


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Kernel Mean Shrinkage Estimators

Muandet, K., Sriperumbudur, B., Fukumizu, K., Gretton, A., Schölkopf, B.

Journal of Machine Learning Research, 17(48):1-41, 2016 (article)

ei

link (url) [BibTex]

link (url) [BibTex]


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Learning to Deblur

Schuler, C. J., Hirsch, M., Harmeling, S., Schölkopf, B.

IEEE Transactions on Pattern Analysis and Machine Intelligence, 38(7):1439-1451, IEEE, 2016 (article)

ei

DOI [BibTex]

DOI [BibTex]


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Transfer Learning in Brain-Computer Interfaces

Jayaram, V., Alamgir, M., Altun, Y., Schölkopf, B., Grosse-Wentrup, M.

IEEE Computational Intelligence Magazine, 11(1):20-31, 2016 (article)

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PDF DOI [BibTex]

PDF DOI [BibTex]


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MERLiN: Mixture Effect Recovery in Linear Networks

Weichwald, S., Grosse-Wentrup, M., Gretton, A.

IEEE Journal of Selected Topics in Signal Processing, 10(7):1254-1266, 2016 (article)

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Arxiv Code PDF DOI Project Page [BibTex]

Arxiv Code PDF DOI Project Page [BibTex]


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Causal inference using invariant prediction: identification and confidence intervals

Peters, J., Bühlmann, P., Meinshausen, N.

Journal of the Royal Statistical Society, Series B (Statistical Methodology), 78(5):947-1012, 2016, (with discussion) (article)

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link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Causal discovery and inference: concepts and recent methodological advances

Spirtes, P., Zhang, K.

Applied Informatics, 3(3):1-28, 2016 (article)

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DOI [BibTex]

DOI [BibTex]


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Self-regulation of brain rhythms in the precuneus: a novel BCI paradigm for patients with ALS

Fomina, T., Lohmann, G., Erb, M., Ethofer, T., Schölkopf, B., Grosse-Wentrup, M.

Journal of Neural Engineering, 13(6):066021, 2016 (article)

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link (url) Project Page [BibTex]


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Influence Estimation and Maximization in Continuous-Time Diffusion Networks

Gomez-Rodriguez, M., Song, L., Du, N., Zha, H., Schölkopf, B.

ACM Transactions on Information Systems, 34(2):9:1-9:33, 2016 (article)

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DOI Project Page Project Page [BibTex]

DOI Project Page Project Page [BibTex]


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The population of long-period transiting exoplanets

Foreman-Mackey, D., Morton, T. D., Hogg, D. W., Agol, E., Schölkopf, B.

The Astronomical Journal, 152(6):206, 2016 (article)

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link (url) Project Page [BibTex]

link (url) Project Page [BibTex]


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Statistical source separation of rhythmic LFP patterns during sharp wave ripples in the macaque hippocampus

Ramirez-Villegas, J. F., Logothetis, N. K., Besserve, M.

47th Annual Meeting of the Society for Neuroscience (Neuroscience), 2016 (poster)

ei

[BibTex]

[BibTex]


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An overview of quantitative approaches in Gestalt perception

Jäkel, F., Singh, M., Wichmann, F. A., Herzog, M. H.

Vision Research, 126, pages: 3-8, 2016 (article)

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link (url) DOI Project Page [BibTex]

link (url) DOI Project Page [BibTex]


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Bootstrat: Population Informed Bootstrapping for Rare Variant Tests

Huang, H., Peloso, G. M., Howrigan, D., Rakitsch, B., Simon-Gabriel, C. J., Goldstein, J. I., Daly, M. J., Borgwardt, K., Neale, B. M.

bioRxiv, 2016, preprint (article)

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link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Probabilistic Movement Models Show that Postural Control Precedes and Predicts Volitional Motor Control

Rueckert, E., Camernik, J., Peters, J., Babic, J.

Nature PG: Scientific Reports, 6(Article number: 28455), 2016 (article)

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DOI Project Page [BibTex]

DOI Project Page [BibTex]


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Learning Taxonomy Adaptation in Large-scale Classification

Babbar, R., Partalas, I., Gaussier, E., Amini, M., Amblard, C.

Journal of Machine Learning Research, 17(98):1-37, 2016 (article)

ei

link (url) Project Page [BibTex]

link (url) Project Page [BibTex]


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Hippocampal neural events predict ongoing brain-wide BOLD activity

Besserve, M., Logothetis, N. K.

47th Annual Meeting of the Society for Neuroscience (Neuroscience), 2016 (poster)

ei

[BibTex]

[BibTex]


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BOiS—Berlin Object in Scene Database: Controlled Photographic Images for Visual Search Experiments with Quantified Contextual Priors

Mohr, J., Seyfarth, J., Lueschow, A., Weber, J. E., Wichmann, F. A., Obermayer, K.

Frontiers in Psychology, 2016 (article)

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DOI [BibTex]

DOI [BibTex]


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Preface to the ACM TIST Special Issue on Causal Discovery and Inference

Zhang, K., Li, J., Bareinboim, E., Schölkopf, B., Pearl, J.

ACM Transactions on Intelligent Systems and Technologies, 7(2):article no. 17, 2016 (article)

ei

DOI [BibTex]

DOI [BibTex]


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Map-Based Probabilistic Visual Self-Localization

Brubaker, M. A., Geiger, A., Urtasun, R.

IEEE Trans. on Pattern Analysis and Machine Intelligence (PAMI), 2016 (article)

Abstract
Accurate and efficient self-localization is a critical problem for autonomous systems. This paper describes an affordable solution to vehicle self-localization which uses odometry computed from two video cameras and road maps as the sole inputs. The core of the method is a probabilistic model for which an efficient approximate inference algorithm is derived. The inference algorithm is able to utilize distributed computation in order to meet the real-time requirements of autonomous systems in some instances. Because of the probabilistic nature of the model the method is capable of coping with various sources of uncertainty including noise in the visual odometry and inherent ambiguities in the map (e.g., in a Manhattan world). By exploiting freely available, community developed maps and visual odometry measurements, the proposed method is able to localize a vehicle to 4m on average after 52 seconds of driving on maps which contain more than 2,150km of drivable roads.

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pdf Project Page [BibTex]

pdf Project Page [BibTex]


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Recurrent Spiking Networks Solve Planning Tasks

Rueckert, E., Kappel, D., Tanneberg, D., Pecevski, D., Peters, J.

Nature PG: Scientific Reports, 6(Article number: 21142), 2016 (article)

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DOI Project Page [BibTex]

DOI Project Page [BibTex]


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Bio-inspired feedback-circuit implementation of discrete, free energy optimizing, winner-take-all computations

Genewein, T, Braun, DA

Biological Cybernetics, 110(2):135–150, June 2016 (article)

Abstract
Bayesian inference and bounded rational decision-making require the accumulation of evidence or utility, respectively, to transform a prior belief or strategy into a posterior probability distribution over hypotheses or actions. Crucially, this process cannot be simply realized by independent integrators, since the different hypotheses and actions also compete with each other. In continuous time, this competitive integration process can be described by a special case of the replicator equation. Here we investigate simple analog electric circuits that implement the underlying differential equation under the constraint that we only permit a limited set of building blocks that we regard as biologically interpretable, such as capacitors, resistors, voltage-dependent conductances and voltage- or current-controlled current and voltage sources. The appeal of these circuits is that they intrinsically perform normalization without requiring an explicit divisive normalization. However, even in idealized simulations, we find that these circuits are very sensitive to internal noise as they accumulate error over time. We discuss in how far neural circuits could implement these operations that might provide a generic competitive principle underlying both perception and action.

ei

DOI [BibTex]

DOI [BibTex]


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Decision-Making under Ambiguity Is Modulated by Visual Framing, but Not by Motor vs. Non-Motor Context: Experiments and an Information-Theoretic Ambiguity Model

Grau-Moya, J, Ortega, PA, Braun, DA

PLoS ONE, 11(4):1-21, April 2016 (article)

Abstract
A number of recent studies have investigated differences in human choice behavior depending on task framing, especially comparing economic decision-making to choice behavior in equivalent sensorimotor tasks. Here we test whether decision-making under ambiguity exhibits effects of task framing in motor vs. non-motor context. In a first experiment, we designed an experience-based urn task with varying degrees of ambiguity and an equivalent motor task where subjects chose between hitting partially occluded targets. In a second experiment, we controlled for the different stimulus design in the two tasks by introducing an urn task with bar stimuli matching those in the motor task. We found ambiguity attitudes to be mainly influenced by stimulus design. In particular, we found that the same subjects tended to be ambiguity-preferring when choosing between ambiguous bar stimuli, but ambiguity-avoiding when choosing between ambiguous urn sample stimuli. In contrast, subjects’ choice pattern was not affected by changing from a target hitting task to a non-motor context when keeping the stimulus design unchanged. In both tasks subjects’ choice behavior was continuously modulated by the degree of ambiguity. We show that this modulation of behavior can be explained by an information-theoretic model of ambiguity that generalizes Bayes-optimal decision-making by combining Bayesian inference with robust decision-making under model uncertainty. Our results demonstrate the benefits of information-theoretic models of decision-making under varying degrees of ambiguity for a given context, but also demonstrate the sensitivity of ambiguity attitudes across contexts that theoretical models struggle to explain.

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DOI [BibTex]

2007


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A Tutorial on Spectral Clustering

von Luxburg, U.

Statistics and Computing, 17(4):395-416, December 2007 (article)

Abstract
In recent years, spectral clustering has become one of the most popular modern clustering algorithms. It is simple to implement, can be solved efficiently by standard linear algebra software, and very often outperforms traditional clustering algorithms such as the k-means algorithm. On the first glance spectral clustering appears slightly mysterious, and it is not obvious to see why it works at all and what it really does. The goal of this tutorial is to give some intuition on those questions. We describe different graph Laplacians and their basic properties, present the most common spectral clustering algorithms, and derive those algorithms from scratch by several different approaches. Advantages and disadvantages of the different spectral clustering algorithms are discussed.

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PDF PDF DOI [BibTex]

2007


PDF PDF DOI [BibTex]


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A Tutorial on Kernel Methods for Categorization

Jäkel, F., Schölkopf, B., Wichmann, F.

Journal of Mathematical Psychology, 51(6):343-358, December 2007 (article)

Abstract
The abilities to learn and to categorize are fundamental for cognitive systems, be it animals or machines, and therefore have attracted attention from engineers and psychologists alike. Modern machine learning methods and psychological models of categorization are remarkably similar, partly because these two fields share a common history in artificial neural networks and reinforcement learning. However, machine learning is now an independent and mature field that has moved beyond psychologically or neurally inspired algorithms towards providing foundations for a theory of learning that is rooted in statistics and functional analysis. Much of this research is potentially interesting for psychological theories of learning and categorization but also hardly accessible for psychologists. Here, we provide a tutorial introduction to a popular class of machine learning tools, called kernel methods. These methods are closely related to perceptrons, radial-basis-function neural networks and exemplar theories of catego rization. Recent theoretical advances in machine learning are closely tied to the idea that the similarity of patterns can be encapsulated in a positive definite kernel. Such a positive definite kernel can define a reproducing kernel Hilbert space which allows one to use powerful tools from functional analysis for the analysis of learning algorithms. We give basic explanations of some key concepts—the so-called kernel trick, the representer theorem and regularization—which may open up the possibility that insights from machine learning can feed back into psychology.

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PDF Web DOI [BibTex]

PDF Web DOI [BibTex]


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Accurate Splice site Prediction Using Support Vector Machines

Sonnenburg, S., Schweikert, G., Philips, P., Behr, J., Rätsch, G.

BMC Bioinformatics, 8(Supplement 10):1-16, December 2007 (article)

Abstract
Background: For splice site recognition, one has to solve two classification problems: discriminating true from decoy splice sites for both acceptor and donor sites. Gene finding systems typically rely on Markov Chains to solve these tasks. Results: In this work we consider Support Vector Machines for splice site recognition. We employ the so-called weighted degree kernel which turns out well suited for this task, as we will illustrate in several experiments where we compare its prediction accuracy with that of recently proposed systems. We apply our method to the genome-wide recognition of splice sites in Caenorhabditis elegans, Drosophila melanogaster, Arabidopsis thaliana, Danio rerio, and Homo sapiens. Our performance estimates indicate that splice sites can be recognized very accurately in these genomes and that our method outperforms many other methods including Markov Chains, GeneSplicer and SpliceMachine. We provide genome-wide predictions of splice sites and a stand-alone prediction tool ready to be used for incorporation in a gene finder. Availability: Data, splits, additional information on the model selection, the whole genome predictions, as well as the stand-alone prediction tool are available for download at http:// www.fml.mpg.de/raetsch/projects/splice.

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PDF DOI [BibTex]

PDF DOI [BibTex]


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MR-Based PET Attenuation Correction: Method and Validation

Hofmann, M., Steinke, F., Scheel, V., Charpiat, G., Brady, M., Schölkopf, B., Pichler, B.

2007 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS-MIC 2007), 2007(M16-6):1-2, November 2007 (poster)

Abstract
PET/MR combines the high soft tissue contrast of Magnetic Resonance Imaging (MRI) and the functional information of Positron Emission Tomography (PET). For quantitative PET information, correction of tissue photon attenuation is mandatory. Usually in conventional PET, the attenuation map is obtained from a transmission scan, which uses a rotating source, or from the CT scan in case of combined PET/CT. In the case of a PET/MR scanner, there is insufficient space for the rotating source and ideally one would want to calculate the attenuation map from the MR image instead. Since MR images provide information about proton density of the different tissue types, it is not trivial to use this data for PET attenuation correction. We present a method for predicting the PET attenuation map from a given the MR image, using a combination of atlas-registration and recognition of local patterns. Using "leave one out cross validation" we show on a database of 16 MR-CT image pairs that our method reliably allows estimating the CT image from the MR image. Subsequently, as in PET/CT, the PET attenuation map can be predicted from the CT image. On an additional dataset of MR/CT/PET triplets we quantitatively validate that our approach allows PET quantification with an error that is smaller than what would be clinically significant. We demonstrate our approach on T1-weighted human brain scans. However, the presented methods are more general and current research focuses on applying the established methods to human whole body PET/MRI applications.

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PDF PDF [BibTex]

PDF PDF [BibTex]


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Estimating receptive fields without spike-triggering

Macke, J., Zeck, G., Bethge, M.

37th annual Meeting of the Society for Neuroscience (Neuroscience 2007), 37(768.1):1, November 2007 (poster)

ei

Web [BibTex]

Web [BibTex]


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Evaluation of Deformable Registration Methods for MR-CT Atlas Alignment

Scheel, V., Hofmann, M., Rehfeld, N., Judenhofer, M., Claussen, C., Pichler, B.

2007 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS-MIC 2007), 2007(M13-121):1, November 2007 (poster)

Abstract
Deformable registration methods are essential for multimodality imaging. Many different methods exist but due to the complexity of the deformed images a direct comparison of the methods is difficult. One particular application that requires high accuracy registration of MR-CT images is atlas-based attenuation correction for PET/MR. We compare four deformable registration algorithms for 3D image data included in the Open Source "National Library of Medicine Insight Segmentation and Registration Toolkit" (ITK). An interactive landmark based registration using MiraView (Siemens) has been used as gold standard. The automatic algorithms provided by ITK are based on the metrics Mattes mutual information as well as on normalized mutual information. The transformations are calculated by interpolating over a uniform B-Spline grid laying over the image to be warped. The algorithms were tested on head images from 10 subjects. We implemented a measure which segments head interior bone and air based on the CT images and l ow intensity classes of corresponding MRI images. The segmentation of bone is performed by individually calculating the lowest Hounsfield unit threshold for each CT image. The compromise is made by quantifying the number of overlapping voxels of the remaining structures. We show that the algorithms provided by ITK achieve similar or better accuracy than the time-consuming interactive landmark based registration. Thus, ITK provides an ideal platform to generate accurately fused datasets from different modalities, required for example for building training datasets for Atlas-based attenuation correction.

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PDF [BibTex]

PDF [BibTex]