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2019


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Limitations of the empirical Fisher approximation for natural gradient descent

Kunstner, F., Hennig, P., Balles, L.

Advances in Neural Information Processing Systems 32, pages: 4158-4169, (Editors: H. Wallach and H. Larochelle and A. Beygelzimer and F. d’Alché-Buc and E. Fox and R. Garnett), Curran Associates, Inc., 33rd Annual Conference on Neural Information Processing Systems, December 2019 (conference)

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link (url) [BibTex]

2019


link (url) [BibTex]


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Convergence Guarantees for Adaptive Bayesian Quadrature Methods

Kanagawa, M., Hennig, P.

Advances in Neural Information Processing Systems 32, pages: 6234-6245, (Editors: H. Wallach and H. Larochelle and A. Beygelzimer and F. d’Alché-Buc and E. Fox and R. Garnett), Curran Associates, Inc., 33rd Annual Conference on Neural Information Processing Systems, December 2019 (conference)

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link (url) [BibTex]

link (url) [BibTex]


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DeepOBS: A Deep Learning Optimizer Benchmark Suite

Schneider, F., Balles, L., Hennig, P.

7th International Conference on Learning Representations (ICLR), ICLR, 7th International Conference on Learning Representations (ICLR), May 2019 (conference)

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link (url) [BibTex]

link (url) [BibTex]


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Aging phenomena during phase separation in fluids: decay of autocorrelation for vapor-liquid transitions

Roy, S., Bera, A., Majumder, S., Das, S. K.

Soft Matter, 15(23):4743-4750, Royal Society of Chemistry, Cambridge, UK, May 2019 (article)

Abstract
We performed molecular dynamics simulations to study relaxation phenomena during vapor–liquid transitions in a single component Lennard-Jones system. Results from two different overall densities are presented: one in the neighborhood of the vapor branch of the coexistence curve and the other being close to the critical density. The nonequilibrium morphologies, growth mechanisms and growth laws in the two cases are vastly different. In the low density case growth occurs via diffusive coalescence of droplets in a disconnected morphology. On the other hand, the elongated structure in the higher density case grows via advective transport of particles inside the tube-like liquid domains. The objective in this work has been to identify how the decay of the order-parameter autocorrelation, an important quantity to understand aging dynamics, differs in the two cases. In the case of the disconnected morphology, we observe a very robust power-law decay, as a function of the ratio of the characteristic lengths at the observation time and at the age of the system, whereas the results for the percolating structure appear rather complex. To quantify the decay in the latter case, unlike the standard method followed in a previous study, here we have performed a finite-size scaling analysis. The outcome of this analysis shows the presence of a strong preasymptotic correction, while revealing that in this case also, albeit in the asymptotic limit, the decay follows a power-law. Even though the corresponding exponents in the two cases differ drastically, this study, combined with a few recent ones, suggests that power-law behavior of this correlation function is rather universal in coarsening dynamics.

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link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Fast and Robust Shortest Paths on Manifolds Learned from Data

Arvanitidis, G., Hauberg, S., Hennig, P., Schober, M.

Proceedings of the 22nd International Conference on Artificial Intelligence and Statistics (AISTATS), 89, pages: 1506-1515, (Editors: Kamalika Chaudhuri and Masashi Sugiyama), PMLR, April 2019 (conference)

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PDF link (url) [BibTex]

PDF link (url) [BibTex]


Active Probabilistic Inference on Matrices for Pre-Conditioning in Stochastic Optimization
Active Probabilistic Inference on Matrices for Pre-Conditioning in Stochastic Optimization

de Roos, F., Hennig, P.

Proceedings of the 22nd International Conference on Artificial Intelligence and Statistics (AISTATS), 89, pages: 1448-1457, (Editors: Kamalika Chaudhuri and Masashi Sugiyama), PMLR, April 2019 (conference)

Abstract
Pre-conditioning is a well-known concept that can significantly improve the convergence of optimization algorithms. For noise-free problems, where good pre-conditioners are not known a priori, iterative linear algebra methods offer one way to efficiently construct them. For the stochastic optimization problems that dominate contemporary machine learning, however, this approach is not readily available. We propose an iterative algorithm inspired by classic iterative linear solvers that uses a probabilistic model to actively infer a pre-conditioner in situations where Hessian-projections can only be constructed with strong Gaussian noise. The algorithm is empirically demonstrated to efficiently construct effective pre-conditioners for stochastic gradient descent and its variants. Experiments on problems of comparably low dimensionality show improved convergence. In very high-dimensional problems, such as those encountered in deep learning, the pre-conditioner effectively becomes an automatic learning-rate adaptation scheme, which we also empirically show to work well.

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PDF link (url) [BibTex]

PDF link (url) [BibTex]


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Response of active Brownian particles to shear flow

Asheichyk, K., Solon, A., Rohwer, C. M., Krüger, M.

The Journal of Chemical Physics, 150(14), American Institute of Physics, Woodbury, N.Y., 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Vortex Mass in the Three-Dimensional O(2) Scalar Theory

Delfino, G., Selke, W., Squarcini, A.

Physical Review Letters, 122(5), American Physical Society, Woodbury, N.Y., 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Ferromagnetic colloids in liquid crystal solvents

Zarubin, G.

Universität Stuttgart, Stuttgart, 2019 (phdthesis)

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link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Fluctuating interface with a pinning potential

Pranjić, Daniel

Universität Stuttgart, Stuttgart, 2019 (mastersthesis)

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[BibTex]

[BibTex]


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Dynamics near planar walls for various model self-phoretic particles

Bayati, P., Popescu, M. N., Uspal, W. E., Dietrich, S., Najafi, A.

Soft Matter, 15(28):5644-5672, Royal Society of Chemistry, Cambridge, UK, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Glucose Oxidase Micropumps: Multi-Faceted Effects of Chemical Activity on Tracer Particles Near the Solid-Liquid Interface

Munteanu, R. E., Popescu, M. N., Gáspár, S.

Condensed Matter, 4(3), MDPI, Basel, 2019 (article)

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DOI [BibTex]


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Criticality senses topology

Vasilyev, O. A., Maciolek, A., Dietrich, S.

EPL, 128(2), EDP Science, Les-Ulis, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Soft Sensors for Curvature Estimation under Water in a Soft Robotic Fish

Wright, Brian, Vogt, Daniel M., Wood, Robert J., Jusufi, Ardian

In 2019 2nd IEEE International Conference on Soft Robotics (RoboSoft 2019), pages: 367-371, IEEE, Piscataway, NJ, 2nd IEEE International Conference on Soft Robotics (RoboSoft 2019), 2019 (inproceedings)

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DOI [BibTex]

DOI [BibTex]


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On the positivity and magnitudes of Bayesian quadrature weights

Karvonen, T., Kanagawa, M., Särkä, S.

Statistics and Computing, 29, pages: 1317-1333, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Probabilistic solutions to ordinary differential equations as nonlinear Bayesian filtering: a new perspective

Tronarp, F., Kersting, H., Särkkä, S. H. P.

Statistics and Computing, 29(6):1297-1315, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Drag Force for Asymmetrically Grafted Colloids in Polymer Solutions

Werner, M., Malgaretti, P., Maciolek, A.

Frontiers in Physics, 7, Frontiers Media, Lausanne, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Feeling Your Neighbors across the Walls: How Interpore Ionic Interactions Affect Capacitive Energy Storage

Kondrat, S., Vasilyev, O., Kornyshev, A. A.

The Journal of Physical Chemistry Letters, 10(16):4523-4527, American Chemical Society, Washington, DC, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Active Janus colloids at chemically structured surfaces

Uspal, W. E., Popescu, M. N., Dietrich, S., Tasinkevych, M.

The Journal of Chemical Physics, 150(20), American Institute of Physics, Woodbury, N.Y., 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Illumination-induced motion of a Janus nanoparticle in binary solvents

Araki, T., Maciolek, A.

Soft Matter, 15(26):5243-5254, Royal Society of Chemistry, Cambridge, UK, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Transient response of an electrolyte to a thermal quench

Janssen, M., Bier, M.

Physical Review E, 99(4), American Physical Society, Melville, NY, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Controlling pattern formation in the confined Schnakenberg model

Beyer, David Bernhard

Universität Stuttgart, Stuttgart, 2019 (mastersthesis)

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[BibTex]

[BibTex]


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Flux and storage of energy in nonequilibrium stationary states

Holyst, R., Maciolek, A., Zhang, Y., Litniewski, M., Knycha\la, P., Kasprzak, M., Banaszak, M.

Physical Review E, 99(4), American Physical Society, Melville, NY, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Correlations and forces in sheared fluids with or without quenching

Rohwer, C. M., Maciolek, A., Dietrich, S., Krüger, M.

New Journal of Physics, 21, IOP Publishing, Bristol, 2019 (article)

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DOI [BibTex]


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Ensemble dependence of critical Casimir forces in films with Dirichlet boundary conditions

Rohwer, C. M., Squarcini, A., Vasilyev, O., Dietrich, S., Gross, M.

Physical Review E, 99(6), American Physical Society, Melville, NY, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Controlling the dynamics of colloidal particles by critical Casimir forces

Magazzù, A., Callegari, A., Staforelli, J. P., Gambassi, A., Dietrich, S., Volpe, G.

Soft Matter, 15(10):2152-2162, Royal Society of Chemistry, Cambridge, UK, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Charge regulation radically modifies electrostatics in membrane stacks

Majee, A., Bier, M., Blossey, R., Podgornik, R.

Physical Review E, 100(5), American Physical Society, Melville, NY, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Co-Contraction facilitates Body Stiffness Modulation during Swimming with Sensory Feedback in a Soft Biorobotic Physical Model

Jusufi, A., Vogt, D., Wood, R. J.

Integrative and Comparative Biology, 59(Supplement 1):E116-E116, Society of Integrative and Comparative Biology, McLean, VA, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Comment on "Which interactions dominate in active colloids?" [J. Chem. Phys. 150, 061102 (2019)]

Popescu, M. N., Dominguez, A., Uspal, W. E., Tasinkevych, M., Dietrich, S.

The Journal of Chemical Physics, 151(6), American Institute of Physics, Woodbury, N.Y., 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Current-mediated synchronization of a pair of beating non-identical flagella

Dotsenko, V., Maciolek, A., Oshanin, G., Vasilyev, O., Dietrich, S.

New Journal of Physics, 21, IOP Publishing, Bristol, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Driving an electrolyte through a corrugated nanopore

Malgaretti, P., Janssen, M., Pagonabarraga, I., Rubi, J. M.

The Journal of Chemical Physics, 151(8), American Institute of Physics, Woodbury, N.Y., 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Interfaces in fluids of ionic liquid crystals

Bartsch, H.

Universität Stuttgart, Stuttgart, 2019 (phdthesis)

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link (url) DOI [BibTex]

link (url) DOI [BibTex]


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Spectral Content of a Single Non-Brownian Trajectory

Krapf, D., Lukat, N., Marinari, E., Metzler, R., Oshanin, G., Selhuber-Unkel, C., Squarcini, A., Stadler, L., Weiss, M., Xu, X.

Physical Review X, 9(1), American Physical Society, New York, NY, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Curvature affects electrolyte relaxation: Studies of spherical and cylindrical electrodes

Janssen, M.

Physical Review E, 100(4), American Physical Society, Melville, NY, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Dense connectomic reconstruction in layer 4 of the somatosensory cortex

Motta, A., Berning, M., Boergens, K. M., Staffler, B., Beining, M., Loomba, S., Hennig, P., Wissler, H., Helmstaedter, M.

Science, 366(6469):eaay3134, American Association for the Advancement of Science, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Dynamics of the critical Casimir force for a conserved order parameter after a critical quench

Gross, M., Rohwer, C. M., Dietrich, S.

Physical Review E, 100(1), American Physical Society, Melville, NY, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Interface structures in ionic liquid crystals

Bartsch, H., Bier, M., Dietrich, S.

Soft Matter, 15(20):4109-4126, Royal Society of Chemistry, Cambridge, UK, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Interfacial premelting of ice in nano composite materials

Li, H., Bier, M., Mars, J., Weiss, H., Dippel, A., Gutowski, O., Honkimäki, V., Mezger, M.

Physical Chemistry Chemical Physics, 21(7):3734-3741, Royal Society of Chemistry, Cambridge, England, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Connections Matter: On the Importance of Pore Percolation for Nanoporous Supercapacitors

Vasilyev, O., Kornyshev, A. A., Kondrat, S.

ACS Applied Energy Materials, 2(8):5386-5390, American Chemical Society, Washington, DC, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Theory of light-activated catalytic Janus particles

Uspal, W. E.

The Journal of Chemical Physics, 150(11), American Institute of Physics, Woodbury, N.Y., 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Recovering superhydrophobicity in nanoscale and macroscale surface textures

Giacomello, A., Schimmele, L., Dietrich, S., Tasinkevych, M.

Soft Matter, 15(37):7462-7471, Royal Society of Chemistry, Cambridge, UK, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Brownian dynamics assessment of enhanced diffusion exhibited by "fluctuating-dumbbell enzymes".

Kondrat, S., Popescu, M. N.

Physical Chemistry Chemical Physics, 21(35):18811-18815, Royal Society of Chemistry, Cambridge, England, 2019 (article)

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DOI [BibTex]

DOI [BibTex]


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Heads or Tails? Cranio-Caudal Mass Distribution for Robust Locomotion with Biorobotic Appendages Composed of 3D-Printed Soft Materials

Siddall, R., Schwab, F., Michel, J., Weaver, J., Jusufi, A.

In Biomimetic and Biohybrid Systems, 11556, pages: 240-253, Lecture Notes in Artificial Intelligence, (Editors: Martinez-Hernandez, Uriel and Vouloutsi, Vasiliki and Mura, Anna and Mangan, Michael and Asada, Minoru and Prescott, Tony J. and Verschure, Paul F. M. J.), Springer, Cham, Living Machines 2019: 8th International Conference on Biomimetic and Biohybrid Systems, 2019 (inproceedings)

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DOI [BibTex]

DOI [BibTex]


Probabilistic Linear Solvers: A Unifying View
Probabilistic Linear Solvers: A Unifying View

Bartels, S., Cockayne, J., Ipsen, I., Hennig, P.

Statistics and Computing, 29(6):1249-1263, 2019 (article)

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link (url) DOI [BibTex]

link (url) DOI [BibTex]