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2001


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Anabolic and Catabolic Gene Expression Pattern Analysis in Normal Versus Osteoarthritic Cartilage Using Complementary DNA-Array Technology

Aigner, T., Zien, A., Gehrsitz, A., Gebhard, P., McKenna, L.

Arthritis and Rheumatism, 44(12):2777-2789, December 2001 (article)

ei

Web [BibTex]

2001


Web [BibTex]


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Kernel Methods for Extracting Local Image Semantics

Bradshaw, B., Schölkopf, B., Platt, J.

(MSR-TR-2001-99), Microsoft Research, October 2001 (techreport)

ei

Web [BibTex]

Web [BibTex]


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Generalization performance of regularization networks and support vector machines via entropy numbers of compact operators

Williamson, R., Smola, A., Schölkopf, B.

IEEE Transactions on Information Theory, 47(6):2516-2532, September 2001 (article)

Abstract
We derive new bounds for the generalization error of kernel machines, such as support vector machines and related regularization networks by obtaining new bounds on their covering numbers. The proofs make use of a viewpoint that is apparently novel in the field of statistical learning theory. The hypothesis class is described in terms of a linear operator mapping from a possibly infinite-dimensional unit ball in feature space into a finite-dimensional space. The covering numbers of the class are then determined via the entropy numbers of the operator. These numbers, which characterize the degree of compactness of the operator can be bounded in terms of the eigenvalues of an integral operator induced by the kernel function used by the machine. As a consequence, we are able to theoretically explain the effect of the choice of kernel function on the generalization performance of support vector machines.

ei

DOI [BibTex]

DOI [BibTex]


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Calibration of Digital Amateur Cameras

Urbanek, M., Horaud, R., Sturm, P.

(RR-4214), INRIA Rhone Alpes, Montbonnot, France, July 2001 (techreport)

ei

Web [BibTex]

Web [BibTex]


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Centralization: A new method for the normalization of gene expression data

Zien, A., Aigner, T., Zimmer, R., Lengauer, T.

Bioinformatics, 17, pages: S323-S331, June 2001, Mathematical supplement available at http://citeseer.ist.psu.edu/574280.html (article)

Abstract
Microarrays measure values that are approximately proportional to the numbers of copies of different mRNA molecules in samples. Due to technical difficulties, the constant of proportionality between the measured intensities and the numbers of mRNA copies per cell is unknown and may vary for different arrays. Usually, the data are normalized (i.e., array-wise multiplied by appropriate factors) in order to compensate for this effect and to enable informative comparisons between different experiments. Centralization is a new two-step method for the computation of such normalization factors that is both biologically better motivated and more robust than standard approaches. First, for each pair of arrays the quotient of the constants of proportionality is estimated. Second, from the resulting matrix of pairwise quotients an optimally consistent scaling of the samples is computed.

ei

PDF PostScript Web [BibTex]

PDF PostScript Web [BibTex]


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Regularized principal manifolds

Smola, A., Mika, S., Schölkopf, B., Williamson, R.

Journal of Machine Learning Research, 1, pages: 179-209, June 2001 (article)

Abstract
Many settings of unsupervised learning can be viewed as quantization problems - the minimization of the expected quantization error subject to some restrictions. This allows the use of tools such as regularization from the theory of (supervised) risk minimization for unsupervised learning. This setting turns out to be closely related to principal curves, the generative topographic map, and robust coding. We explore this connection in two ways: (1) we propose an algorithm for finding principal manifolds that can be regularized in a variety of ways; and (2) we derive uniform convergence bounds and hence bounds on the learning rates of the algorithm. In particular, we give bounds on the covering numbers which allows us to obtain nearly optimal learning rates for certain types of regularization operators. Experimental results demonstrate the feasibility of the approach.

ei

PDF [BibTex]

PDF [BibTex]


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Variationsverfahren zur Untersuchung von Grundzustandseigenschaften des Ein-Band Hubbard-Modells

Eichhorn, J.

Biologische Kybernetik, Technische Universität Dresden, Dresden/Germany, May 2001 (diplomathesis)

Abstract
Using different modifications of a new variational approach, statical groundstate properties of the one-band Hubbard model such as energy and staggered magnetisation are calculated. By taking into account additional fluctuations, the method ist gradually improved so that a very good description of the energy in one and two dimensions can be achieved. After a detailed discussion of the application in one dimension, extensions for two dimensions are introduced. By use of a modified version of the variational ansatz in particular a description of the quantum phase transition for the magnetisation should be possible.

ei

PostScript [BibTex]

PostScript [BibTex]


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Failure Diagnosis of Discrete Event Systems

Son, HI., Kim, KW., Lee, S.

Journal of Control, Automation and Systems Engineering, 7(5):375-383, May 2001, In Korean (article)

ei

[BibTex]

[BibTex]


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Pattern Selection Using the Bias and Variance of Ensemble

Shin, H., Cho, S.

Journal of the Korean Institute of Industrial Engineers, 28(1):112-127, March 2001 (article)

Abstract
[Abstract]: A useful pattern is a pattern that contributes much to learning. For a classification problem those patterns near the class boundary surfaces carry more information to the classifier. For a regression problem the ones near the estimated surface carry more information. In both cases, the usefulness is defined only for those patterns either without error or with negligible error. Using only the useful patterns gives several benefits. First, computational complexity in memory and time for learning is decreased. Second, overfitting is avoided even when the learner is over-sized. Third, learning results in more stable learners. In this paper, we propose a pattern “utility index” that measures the utility of an individual pattern. The utility index is based on the bias and variance of a pattern trained by a network ensemble. In classification, the pattern with a low bias and a high variance gets a high score. In regression, on the other hand, the one with a low bias and a low variance gets a high score. Based on the distribution of the utility index, the original training set is divided into a high-score group and a low-score group. Only the high-score group is then used for training. The proposed method is tested on synthetic and real-world benchmark datasets. The proposed approach gives a better or at least similar performance.

ei

[BibTex]

[BibTex]


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Structure and Functionality of a Designed p53 Dimer.

Davison, TS., Nie, X., Ma, W., Lin, Y., Kay, C., Benchimol, S., Arrowsmith, C.

Journal of Molecular Biology, 307(2):605-617, March 2001 (article)

Abstract
P53 is a homotetrameric tumor suppressor protein involved in transcriptional control of genes that regulate cell proliferation and death. In order to probe the role that oligomerization plays in this capacity, we have previously designed and characterized a series of p53 proteins with altered oligomeric states through hydrophilc substitution of residues Met340 or Leu344 in the normally tetrameric oligomerization domain. Although such mutations have little effect on the overall secondary structural content of the oligomerization domain, both solubility and the resistance to thermal denaturation are substantially reduced relative to that of the wild-type domain. Here, we report the design and characterization of a double-mutant p53 with alterations of residues at positions Met340 and Leu344. The double-mutations Met340Glu/Leu344Lys and Met340Gln/Leu344Arg resulted in distinct dimeric forms of the protein. Furthermore, we have verified by NMR structure determination that the double-mutant Met340Gln/Leu344Arg is essentially a "half-tetramer". Analysis of the in vivo activities of full-length p53 oligomeric mutants reveals that while cell-cycle arrest requires tetrameric p53, transcriptional transactivation activity of monomers and dimers retain roughly background and half of the wild-type activity, respectively.

ei

Web [BibTex]

Web [BibTex]


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An Introduction to Kernel-Based Learning Algorithms

Müller, K., Mika, S., Rätsch, G., Tsuda, K., Schölkopf, B.

IEEE Transactions on Neural Networks, 12(2):181-201, March 2001 (article)

Abstract
This paper provides an introduction to support vector machines, kernel Fisher discriminant analysis, and kernel principal component analysis, as examples for successful kernel-based learning methods. We first give a short background about Vapnik-Chervonenkis theory and kernel feature spaces and then proceed to kernel based learning in supervised and unsupervised scenarios including practical and algorithmic considerations. We illustrate the usefulness of kernel algorithms by discussing applications such as optical character recognition and DNA analysis

ei

DOI [BibTex]

DOI [BibTex]


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Estimating the support of a high-dimensional distribution.

Schölkopf, B., Platt, J., Shawe-Taylor, J., Smola, A., Williamson, R.

Neural Computation, 13(7):1443-1471, March 2001 (article)

Abstract
Suppose you are given some data set drawn from an underlying probability distribution P and you want to estimate a “simple” subset S of input space such that the probability that a test point drawn from P lies outside of S equals some a priori specified value between 0 and 1. We propose a method to approach this problem by trying to estimate a function f that is positive on S and negative on the complement. The functional form of f is given by a kernel expansion in terms of a potentially small subset of the training data; it is regularized by controlling the length of the weight vector in an associated feature space. The expansion coefficients are found by solving a quadratic programming problem, which we do by carrying out sequential optimization over pairs of input patterns. We also provide a theoretical analysis of the statistical performance of our algorithm. The algorithm is a natural extension of the support vector algorithm to the case of unlabeled data.

ei

Web DOI [BibTex]

Web DOI [BibTex]


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Cerebellar Control of Robot Arms

Peters, J.

Biologische Kybernetik, Technische Univeristät München, München, Germany, 2001 (diplomathesis)

ei

[BibTex]

[BibTex]


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The psychometric function: II. Bootstrap-based confidence intervals and sampling

Wichmann, F., Hill, N.

Perception and Psychophysics, 63 (8), pages: 1314-1329, 2001 (article)

ei

PDF [BibTex]

PDF [BibTex]


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Incorporating Invariances in Non-Linear Support Vector Machines

Chapelle, O., Schölkopf, B.

Max Planck Institute for Biological Cybernetics / Biowulf Technologies, 2001 (techreport)

Abstract
We consider the problem of how to incorporate in the Support Vector Machine (SVM) framework invariances given by some a priori known transformations under which the data should be invariant. It extends some previous work which was only applicable with linear SVMs and we show on a digit recognition task that the proposed approach is superior to the traditional Virtual Support Vector method.

ei

PostScript [BibTex]

PostScript [BibTex]


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The psychometric function: I. Fitting, sampling and goodness-of-fit

Wichmann, F., Hill, N.

Perception and Psychophysics, 63 (8), pages: 1293-1313, 2001 (article)

Abstract
The psychometric function relates an observer'sperformance to an independent variable, usually some physical quantity of a stimulus in a psychophysical task. This paper, together with its companion paper (Wichmann & Hill, 2001), describes an integrated approach to (1) fitting psychometric functions, (2) assessing the goodness of fit, and (3) providing confidence intervals for the function'sparameters and other estimates derived from them, for the purposes of hypothesis testing. The present paper deals with the first two topics, describing a constrained maximum-likelihood method of parameter estimation and developing several goodness-of-fit tests. Using Monte Carlo simulations, we deal with two specific difficulties that arise when fitting functions to psychophysical data. First, we note that human observers are prone to stimulus-independent errors (or lapses ). We show that failure to account for this can lead to serious biases in estimates of the psychometric function'sparameters and illustrate how the problem may be overcome. Second, we note that psychophysical data sets are usually rather small by the standards required by most of the commonly applied statistical tests. We demonstrate the potential errors of applying traditional X^2 methods to psychophysical data and advocate use of Monte Carlo resampling techniques that do not rely on asymptotic theory. We have made available the software to implement our methods

ei

PDF [BibTex]

PDF [BibTex]


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On Unsupervised Learning of Mixtures of Markov Sources

Seldin, Y.

Biologische Kybernetik, The Hebrew University of Jerusalem, Israel, 2001 (diplomathesis)

ei

PDF [BibTex]

PDF [BibTex]


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Bound on the Leave-One-Out Error for Density Support Estimation using nu-SVMs

Gretton, A., Herbrich, R., Schölkopf, B., Smola, A., Rayner, P.

University of Cambridge, 2001 (techreport)

ei

[BibTex]

[BibTex]


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The control structure of artificial creatures

Zhou, D., Dai, R.

Artificial Life and Robotics, 5(3), 2001, invited article (article)

ei

Web [BibTex]

Web [BibTex]


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Bound on the Leave-One-Out Error for 2-Class Classification using nu-SVMs

Gretton, A., Herbrich, R., Schölkopf, B., Rayner, P.

University of Cambridge, 2001, Updated May 2003 (literature review expanded) (techreport)

Abstract
Three estimates of the leave-one-out error for $nu$-support vector (SV) machine binary classifiers are presented. Two of the estimates are based on the geometrical concept of the {em span}, which was introduced in the context of bounding the leave-one-out error for $C$-SV machine binary classifiers, while the third is based on optimisation over the criterion used to train the $nu$-support vector classifier. It is shown that the estimates presented herein provide informative and efficient approximations of the generalisation behaviour, in both a toy example and benchmark data sets. The proof strategies in the $nu$-SV context are also compared with those used to derive leave-one-out error estimates in the $C$-SV case.

ei

PostScript [BibTex]

PostScript [BibTex]


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Markovian domain fingerprinting: statistical segmentation of protein sequences

Bejerano, G., Seldin, Y., Margalit, H., Tishby, N.

Bioinformatics, 17(10):927-934, 2001 (article)

ei

PDF Web [BibTex]

PDF Web [BibTex]


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Some kernels for structured data

Bartlett, P., Schölkopf, B.

Biowulf Technologies, 2001 (techreport)

ei

[BibTex]

[BibTex]


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Support Vector Machines: Theorie und Anwendung auf Prädiktion epileptischer Anfälle auf der Basis von EEG-Daten

Lal, TN.

Biologische Kybernetik, Institut für Angewandte Mathematik, Universität Bonn, 2001, Advised by Prof. Dr. S. Albeverio (diplomathesis)

ei

ZIP [BibTex]

ZIP [BibTex]


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Inference Principles and Model Selection

Buhmann, J., Schölkopf, B.

(01301), Dagstuhl Seminar, 2001 (techreport)

ei

Web [BibTex]

Web [BibTex]


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Isotropic second-order nonlinear optical susceptibilities

Fischer, P., Buckingham, A., Albrecht, A.

PHYSICAL REVIEW A, 64(5), 2001 (article)

Abstract
The second-order nonlinear optical susceptibility, in the electric dipole approximation, is only nonvanishing for materials that are noncentrosymmetric. Should the medium be isotropic, then only a chiral system. such as an optically active liquid, satisfies this symmetry requirement. We derive the quantum-mechanical form of the isotropic component of the sum- and difference-frequency susceptibility and discuss its unusual spectral properties. We show that any coherent second-order nonlinear optical process in a system of randomly oriented molecules requires the medium to be chiral. and the incident frequencies to be different and nonzero. Furthermore, a minimum of two nondegenerate excited molecular states are needed for the isotropic part of the susceptibility to be nonvanishing. The rotationally invariant susceptibility is zero in the static field limit and shows exceptionally sensitive resonance and dephasing effects that are particular to chiral centers.

pf

DOI [BibTex]

DOI [BibTex]


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Reply to “Comment on ‘Phenomenological damping in optical response tensors’”

Buckingham, A., Fischer, P.

PHYSICAL REVIEW A, 63(4), 2001 (article)

Abstract
We show that damping factors must not be incorporated in the perturbation of the ground state by a static electric field. If they are included, as in the theory of Stedman et al. {[}preceding Comment. Phys. Rev. A 63, 047801 (2001)], then there would be an electric dipole in the y direction induced in a hydrogen atom in the M-s = + 1/2 state by a static electric field in the x direction. Such a dipole is excluded by symmetry.

pf

DOI [BibTex]


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The coercivity of the melt-spun Sm-Fe-Ga-C permanent magnets and the effect of additives (Nb, Cu and Zr)

Zhang, J. X., Kleinschroth, I., Goll, D., Cuevas, F., Kronmüller, H.

{Journal of Physics-Condensed Matter}, 13(46):10487-10496, 2001 (article)

mms

[BibTex]

[BibTex]


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Hardness-depth profile of a carbon-implanted Ti-6Al-4V alloy and its relation to composition and microstructure

Kunert, M., Kienzle, O., Baretzky, B., Baker, S. P., Mittemeijer, E. J.

{Journal of Materials Research}, 16(8):2321-2335, 2001 (article)

mms

[BibTex]

[BibTex]


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Kritische Ströme über Kleinwinkelkorngrenzen in YBCO

Albrecht, J.

Universität Stuttgart, Stuttgart, 2001 (phdthesis)

mms

[BibTex]

[BibTex]


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New Sm(Co, Fe, Cu, Zr)(z) magnets with better temperature stability

Tang, W., Zhang, Y., Goll, D., Hadjipanayis, G. C., Kronmüller, H.

{Journal of Magnetism and Magnetic Materials}, 226(Sp. Iss. SI):1365-1366, 2001 (article)

mms

[BibTex]

[BibTex]


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Hydrogen in nanostructured vanadium-hydrogen systems

Orimo, S., Kimmerle, F., Majer, G.

{Physical Review B}, 63(9), 2001 (article)

mms

[BibTex]

[BibTex]


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Diffusion of hydrogen in heterogeneous systems

Herrmann, A., Schimmele, L., Mössinger, J., Hirscher, M., Kronmüller, H.

{Applied Physics A-Materials Science \& Processing}, 72(2):197-208, 2001 (article)

mms

[BibTex]

[BibTex]


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Von der elektronischen Struktur zum makroskopischen Verhalten: Eine Multi-Skalen Analyse der Plastizität

Kohlhammer, S.

Universität Stuttgart, Stuttgart, 2001 (phdthesis)

mms

[BibTex]


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Structural vacancies in B2-CoAl and NiAl

Meyer, B., Bester, G., Fähnle, M.

{Scripta Materialia}, 44, pages: 2485-2488, 2001 (article)

mms

[BibTex]

[BibTex]


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Grain boundary phase transition in the Cu-Bi system

Straumal, B. B., Prokofyev, S. I., Chang, L.-S., Sluchanko, N. E., Baretzky, B., Gust, W., Mittemeijer, E. J.

{Diffusion and Defect Forum}, 194-199, pages: 1343-1348, 2001 (article)

mms

[BibTex]

[BibTex]


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Carbon nanostructures: an efficient hydrogen storage medium for fuel cells

Atkinson, K., Roth, S., Hirscher, M., Grünwald, W.

{Fuel Cells Bulletin}, 4(38):9-12, 2001 (article)

mms

[BibTex]

[BibTex]


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Magnetic domains in nanostructured media studied with M-TXM

Fischer, P., Eimüller, T., Schütz, G., Bayreuther, G., Tsunashima, S., Tagaki, N., Denbeaux, G., Attwood, D.

{Journal of Synchrotron Radiation}, 8, pages: 325-327, 2001 (article)

mms

[BibTex]

[BibTex]


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Compound formation and abrasion resistance of ion-implanted Ti6Al4V

Schmidt, H., Schminke, A., Schmiedgen, M., Baretzky, B.

{Acta Materialia}, 49, pages: 487-495, 2001 (article)

mms

[BibTex]

[BibTex]


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Interpretation of ab initio total energy results in a chemical language: I. Formalism and implementation into a mixed-basis pseudopotential code

Bester, G., Fähnle, M.

{Journal of Physics-Condensed Matter}, 13(50):11541-11550, 2001 (article)

mms

[BibTex]

[BibTex]


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Faceting of \sum3 and \sum9 grain boundaries in copper

Straumal, B. B., Polyakov, S. A., Bischoff, E., Gust, W., Mittemeijer, E. J.

{Interface Science}, 9(3-4):287-292, 2001 (article)

mms

[BibTex]

[BibTex]


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Generation and application of ultra-high-intensity magnetic field gradient pulses for NMR spectroscopy

Galvosas, P., Stallmach, F., Seiffert, G., Karger, J., Kaess, U., Majer, G.

{Journal of Magnetic Resonance}, 151(2):260-268, 2001 (article)

mms

[BibTex]

[BibTex]


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Formation and structure of highly over-stoichiometric LaNi5+x (x\textasciitilde1) alloys obtained by manifold non-equilibrium methods

Cuevas, F., Latroche, M., Hirscher, M., Percheron-Guegan, A.

{Journal of Alloys and Compounds}, 323, pages: 4-7, 2001 (article)

mms

[BibTex]

[BibTex]


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Hydrogen permeability measurement through Pd, Ni and Fe membranes

Yamakawa, K., Ege, M., Ludescher, B., Hirscher, M., Kronmüller, H.

{Journal of Alloys and Compounds}, 321(1):17-23, 2001 (article)

mms

[BibTex]

[BibTex]


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Ab-initio statistical mechanics for the phase diagram of NiAl including the effect of vacancies

Lechermann, F., Fähnle, M.

{Physica Status Solidi B-Basic Research}, 224(2):R4-R6, 2001 (article)

mms

[BibTex]

[BibTex]


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Uniaxial orientational order-disorder transitions in diammine magnesium halides, Mg(ND3)2Cl2 and Mg(ND3)2Br2, investigated by neutron diffraction

Leineweber, A., Jacobs, H., Fischer, P., Böttger, G.

{Journal of Solid State Chemistry}, 156(2):487-499, 2001 (article)

mms

[BibTex]

[BibTex]


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XMCD study of the Ruddlesden-Popper Phase La1.2Nd0.2Sr1.6Mn2O7

Weigand, F., Goering, E., Geissler, J., Justen, M., Dörr, K., Ruck, K., Schütz, G.

{Journal of Synchrotron Radiation}, 8, pages: 431-433, 2001 (article)

mms

DOI [BibTex]

DOI [BibTex]


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Nonlinear magnetoelastic effect in ultrathin epitaxial fcc Co (001) films: an ab-initio study

Komelj, M., Fähnle, M.

{Journal of Magnetism and Magnetic Materials}, 224, pages: L1-L4, 2001 (article)

mms

[BibTex]

[BibTex]