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2005


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Kernel Methods for Measuring Independence

Gretton, A., Herbrich, R., Smola, A., Bousquet, O., Schölkopf, B.

Journal of Machine Learning Research, 6, pages: 2075-2129, December 2005 (article)

Abstract
We introduce two new functionals, the constrained covariance and the kernel mutual information, to measure the degree of independence of random variables. These quantities are both based on the covariance between functions of the random variables in reproducing kernel Hilbert spaces (RKHSs). We prove that when the RKHSs are universal, both functionals are zero if and only if the random variables are pairwise independent. We also show that the kernel mutual information is an upper bound near independence on the Parzen window estimate of the mutual information. Analogous results apply for two correlation-based dependence functionals introduced earlier: we show the kernel canonical correlation and the kernel generalised variance to be independence measures for universal kernels, and prove the latter to be an upper bound on the mutual information near independence. The performance of the kernel dependence functionals in measuring independence is verified in the context of independent component analysis.

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PDF PostScript PDF [BibTex]

2005


PDF PostScript PDF [BibTex]


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Kernel ICA for Large Scale Problems

Jegelka, S., Gretton, A., Achlioptas, D.

In pages: -, NIPS Workshop on Large Scale Kernel Machines, December 2005 (inproceedings)

ei

Web [BibTex]

Web [BibTex]


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A Unifying View of Sparse Approximate Gaussian Process Regression

Quinonero Candela, J., Rasmussen, C.

Journal of Machine Learning Research, 6, pages: 1935-1959, December 2005 (article)

Abstract
We provide a new unifying view, including all existing proper probabilistic sparse approximations for Gaussian process regression. Our approach relies on expressing the effective prior which the methods are using. This allows new insights to be gained, and highlights the relationship between existing methods. It also allows for a clear theoretically justified ranking of the closeness of the known approximations to the corresponding full GPs. Finally we point directly to designs of new better sparse approximations, combining the best of the existing strategies, within attractive computational constraints.

ei

PDF [BibTex]

PDF [BibTex]


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Extension to Kernel Dependency Estimation with Applications to Robotics

BakIr, G.

Biologische Kybernetik, Technische Universität Berlin, Berlin, November 2005 (phdthesis)

Abstract
Kernel Dependency Estimation(KDE) is a novel technique which was designed to learn mappings between sets without making assumptions on the type of the involved input and output data. It learns the mapping in two stages. In a first step, it tries to estimate coordinates of a feature space representation of elements of the set by solving a high dimensional multivariate regression problem in feature space. Following this, it tries to reconstruct the original representation given the estimated coordinates. This thesis introduces various algorithmic extensions to both stages in KDE. One of the contributions of this thesis is to propose a novel linear regression algorithm that explores low-dimensional subspaces during learning. Furthermore various existing strategies for reconstructing patterns from feature maps involved in KDE are discussed and novel pre-image techniques are introduced. In particular, pre-image techniques for data-types that are of discrete nature such as graphs and strings are investigated. KDE is then explored in the context of robot pose imitation where the input is a an image with a human operator and the output is the robot articulated variables. Thus, using KDE, robot pose imitation is formulated as a regression problem.

ei

PDF PDF [BibTex]

PDF PDF [BibTex]


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Training Support Vector Machines with Multiple Equality Constraints

Kienzle, W., Schölkopf, B.

In Proceedings of the 16th European Conference on Machine Learning, Lecture Notes in Computer Science, Vol. 3720, pages: 182-193, (Editors: JG Carbonell and J Siekmann), Springer, Berlin, Germany, ECML, November 2005 (inproceedings)

Abstract
In this paper we present a primal-dual decomposition algorithm for support vector machine training. As with existing methods that use very small working sets (such as Sequential Minimal Optimization (SMO), Successive Over-Relaxation (SOR) or the Kernel Adatron (KA)), our method scales well, is straightforward to implement, and does not require an external QP solver. Unlike SMO, SOR and KA, the method is applicable to a large number of SVM formulations regardless of the number of equality constraints involved. The effectiveness of our algorithm is demonstrated on a more difficult SVM variant in this respect, namely semi-parametric support vector regression.

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PDF DOI [BibTex]

PDF DOI [BibTex]


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Geometrical aspects of statistical learning theory

Hein, M.

Biologische Kybernetik, Darmstadt, Darmstadt, November 2005 (phdthesis)

ei

PDF [BibTex]

PDF [BibTex]


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Measuring Statistical Dependence with Hilbert-Schmidt Norms

Gretton, A., Bousquet, O., Smola, A., Schoelkopf, B.

In Algorithmic Learning Theory, Lecture Notes in Computer Science, Vol. 3734, pages: 63-78, (Editors: S Jain and H-U Simon and E Tomita), Springer, Berlin, Germany, 16th International Conference ALT, October 2005 (inproceedings)

Abstract
We propose an independence criterion based on the eigenspectrum of covariance operators in reproducing kernel Hilbert spaces (RKHSs), consisting of an empirical estimate of the Hilbert-Schmidt norm of the cross-covariance operator (we term this a Hilbert-Schmidt Independence Criterion, or HSIC). This approach has several advantages, compared with previous kernel-based independence criteria. First, the empirical estimate is simpler than any other kernel dependence test, and requires no user-defined regularisation. Second, there is a clearly defined population quantity which the empirical estimate approaches in the large sample limit, with exponential convergence guaranteed between the two: this ensures that independence tests based on {methodname} do not suffer from slow learning rates. Finally, we show in the context of independent component analysis (ICA) that the performance of HSIC is competitive with that of previously published kernel-based criteria, and of other recently published ICA methods.

ei

PDF DOI [BibTex]

PDF DOI [BibTex]


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Maximal Margin Classification for Metric Spaces

Hein, M., Bousquet, O., Schölkopf, B.

Journal of Computer and System Sciences, 71(3):333-359, October 2005 (article)

Abstract
In order to apply the maximum margin method in arbitrary metric spaces, we suggest to embed the metric space into a Banach or Hilbert space and to perform linear classification in this space. We propose several embeddings and recall that an isometric embedding in a Banach space is always possible while an isometric embedding in a Hilbert space is only possible for certain metric spaces. As a result, we obtain a general maximum margin classification algorithm for arbitrary metric spaces (whose solution is approximated by an algorithm of Graepel. Interestingly enough, the embedding approach, when applied to a metric which can be embedded into a Hilbert space, yields the SVM algorithm, which emphasizes the fact that its solution depends on the metric and not on the kernel. Furthermore we give upper bounds of the capacity of the function classes corresponding to both embeddings in terms of Rademacher averages. Finally we compare the capacities of these function classes directly.

ei

PDF PDF DOI [BibTex]

PDF PDF DOI [BibTex]


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An Analysis of the Anti-Learning Phenomenon for the Class Symmetric Polyhedron

Kowalczyk, A., Chapelle, O.

In Algorithmic Learning Theory: 16th International Conference, pages: 78-92, Algorithmic Learning Theory, October 2005 (inproceedings)

Abstract
This paper deals with an unusual phenomenon where most machine learning algorithms yield good performance on the training set but systematically worse than random performance on the test set. This has been observed so far for some natural data sets and demonstrated for some synthetic data sets when the classification rule is learned from a small set of training samples drawn from some high dimensional space. The initial analysis presented in this paper shows that anti-learning is a property of data sets and is quite distinct from overfitting of a training data. Moreover, the analysis leads to a specification of some machine learning procedures which can overcome anti-learning and generate ma- chines able to classify training and test data consistently.

ei

PDF [BibTex]

PDF [BibTex]


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Selective integration of multiple biological data for supervised network inference

Kato, T., Tsuda, K., Asai, K.

Bioinformatics, 21(10):2488 , October 2005 (article)

ei

PDF [BibTex]

PDF [BibTex]


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Assessing Approximate Inference for Binary Gaussian Process Classification

Kuss, M., Rasmussen, C.

Journal of Machine Learning Research, 6, pages: 1679 , October 2005 (article)

Abstract
Gaussian process priors can be used to define flexible, probabilistic classification models. Unfortunately exact Bayesian inference is analytically intractable and various approximation techniques have been proposed. In this work we review and compare Laplace‘s method and Expectation Propagation for approximate Bayesian inference in the binary Gaussian process classification model. We present a comprehensive comparison of the approximations, their predictive performance and marginal likelihood estimates to results obtained by MCMC sampling. We explain theoretically and corroborate empirically the advantages of Expectation Propagation compared to Laplace‘s method.

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PDF PDF [BibTex]

PDF PDF [BibTex]


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Implicit Surfaces For Modelling Human Heads

Steinke, F.

Biologische Kybernetik, Eberhard-Karls-Universität, Tübingen, September 2005 (diplomathesis)

ei

[BibTex]

[BibTex]


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Clustering on the Unit Hypersphere using von Mises-Fisher Distributions

Banerjee, A., Dhillon, I., Ghosh, J., Sra, S.

Journal of Machine Learning Research, 6, pages: 1345-1382, September 2005 (article)

Abstract
Several large scale data mining applications, such as text categorization and gene expression analysis, involve high-dimensional data that is also inherently directional in nature. Often such data is L2 normalized so that it lies on the surface of a unit hypersphere. Popular models such as (mixtures of) multi-variate Gaussians are inadequate for characterizing such data. This paper proposes a generative mixture-model approach to clustering directional data based on the von Mises-Fisher (vMF) distribution, which arises naturally for data distributed on the unit hypersphere. In particular, we derive and analyze two variants of the Expectation Maximization (EM) framework for estimating the mean and concentration parameters of this mixture. Numerical estimation of the concentration parameters is non-trivial in high dimensions since it involves functional inversion of ratios of Bessel functions. We also formulate two clustering algorithms corresponding to the variants of EM that we derive. Our approach provides a theoretical basis for the use of cosine similarity that has been widely employed by the information retrieval community, and obtains the spherical kmeans algorithm (kmeans with cosine similarity) as a special case of both variants. Empirical results on clustering of high-dimensional text and gene-expression data based on a mixture of vMF distributions show that the ability to estimate the concentration parameter for each vMF component, which is not present in existing approaches, yields superior results, especially for difficult clustering tasks in high-dimensional spaces.

ei

PDF [BibTex]

PDF [BibTex]


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Support Vector Machines for 3D Shape Processing

Steinke, F., Schölkopf, B., Blanz, V.

Computer Graphics Forum, 24(3, EUROGRAPHICS 2005):285-294, September 2005 (article)

Abstract
We propose statistical learning methods for approximating implicit surfaces and computing dense 3D deformation fields. Our approach is based on Support Vector (SV) Machines, which are state of the art in machine learning. It is straightforward to implement and computationally competitive; its parameters can be automatically set using standard machine learning methods. The surface approximation is based on a modified Support Vector regression. We present applications to 3D head reconstruction, including automatic removal of outliers and hole filling. In a second step, we build on our SV representation to compute dense 3D deformation fields between two objects. The fields are computed using a generalized SVMachine enforcing correspondence between the previously learned implicit SV object representations, as well as correspondences between feature points if such points are available. We apply the method to the morphing of 3D heads and other objects.

ei

PDF [BibTex]

PDF [BibTex]


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Fast Protein Classification with Multiple Networks

Tsuda, K., Shin, H., Schölkopf, B.

Bioinformatics, 21(Suppl. 2):59-65, September 2005 (article)

Abstract
Support vector machines (SVM) have been successfully used to classify proteins into functional categories. Recently, to integrate multiple data sources, a semidefinite programming (SDP) based SVM method was introduced Lanckriet et al (2004). In SDP/SVM, multiple kernel matrices corresponding to each of data sources are combined with weights obtained by solving an SDP. However, when trying to apply SDP/SVM to large problems, the computational cost can become prohibitive, since both converting the data to a kernel matrix for the SVM and solving the SDP are time and memory demanding. Another application-specific drawback arises when some of the data sources are protein networks. A common method of converting the network to a kernel matrix is the diffusion kernel method, which has time complexity of O(n^3), and produces a dense matrix of size n x n. We propose an efficient method of protein classification using multiple protein networks. Available protein networks, such as a physical interaction network or a metabolic network, can be directly incorporated. Vectorial data can also be incorporated after conversion into a network by means of neighbor point connection. Similarly to the SDP/SVM method, the combination weights are obtained by convex optimization. Due to the sparsity of network edges, the computation time is nearly linear in the number of edges of the combined network. Additionally, the combination weights provide information useful for discarding noisy or irrelevant networks. Experiments on function prediction of 3588 yeast proteins show promising results: the computation time is enormously reduced, while the accuracy is still comparable to the SDP/SVM method.

ei

PDF Web DOI [BibTex]

PDF Web DOI [BibTex]


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Iterative Kernel Principal Component Analysis for Image Modeling

Kim, K., Franz, M., Schölkopf, B.

IEEE Transactions on Pattern Analysis and Machine Intelligence, 27(9):1351-1366, September 2005 (article)

Abstract
In recent years, Kernel Principal Component Analysis (KPCA) has been suggested for various image processing tasks requiring an image model such as, e.g., denoising or compression. The original form of KPCA, however, can be only applied to strongly restricted image classes due to the limited number of training examples that can be processed. We therefore propose a new iterative method for performing KPCA, the Kernel Hebbian Algorithm which iteratively estimates the Kernel Principal Components with only linear order memory complexity. In our experiments, we compute models for complex image classes such as faces and natural images which require a large number of training examples. The resulting image models are tested in single-frame super-resolution and denoising applications. The KPCA model is not specifically tailored to these tasks; in fact, the same model can be used in super-resolution with variable input resolution, or denoising with unknown noise characteristics. In spite of this, both super-resolution a nd denoising performance are comparable to existing methods.

ei

Web DOI [BibTex]

Web DOI [BibTex]


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Machine Learning Methods for Brain-Computer Interdaces

Lal, TN.

Biologische Kybernetik, University of Darmstadt, September 2005 (phdthesis)

ei

Web [BibTex]

Web [BibTex]


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Phenotypic characterization of chondrosarcoma-derived cell lines

Schorle, C., Finger, F., Zien, A., Block, J., Gebhard, P., Aigner, T.

Cancer Letters, 226(2):143-154, August 2005 (article)

Abstract
Gene expression profiling of three chondrosarcoma derived cell lines (AD, SM, 105KC) showed an increased proliferative activity and a reduced expression of chondrocytic-typical matrix products compared to primary chondrocytes. The incapability to maintain an adequate matrix synthesis as well as a notable proliferative activity at the same time is comparable to neoplastic chondrosarcoma cells in vivo which cease largely cartilage matrix formation as soon as their proliferative activity increases. Thus, the investigated cell lines are of limited value as substitute of primary chondrocytes but might have a much higher potential to investigate the behavior of neoplastic chondrocytes, i.e. chondrosarcoma biology.

ei

Web [BibTex]

Web [BibTex]


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Local Rademacher Complexities

Bartlett, P., Bousquet, O., Mendelson, S.

The Annals of Statistics, 33(4):1497-1537, August 2005 (article)

Abstract
We propose new bounds on the error of learning algorithms in terms of a data-dependent notion of complexity. The estimates we establish give optimal rates and are based on a local and empirical version of Rademacher averages, in the sense that the Rademacher averages are computed from the data, on a subset of functions with small empirical error. We present some applications to classification and prediction with convex function classes, and with kernel classes in particular.

ei

PDF PostScript Web [BibTex]

PDF PostScript Web [BibTex]


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Building Sparse Large Margin Classifiers

Wu, M., Schölkopf, B., BakIr, G.

In Proceedings of the 22nd International Conference on Machine Learning, pages: 996-1003, (Editors: L De Raedt and S Wrobel ), ACM, New York, NY, USA, ICML , August 2005 (inproceedings)

Abstract
This paper presents an approach to build Sparse Large Margin Classifiers (SLMC) by adding one more constraint to the standard Support Vector Machine (SVM) training problem. The added constraint explicitly controls the sparseness of the classifier and an approach is provided to solve the formulated problem. When considering the dual of this problem, it can be seen that building an SLMC is equivalent to constructing an SVM with a modified kernel function. Further analysis of this kernel function indicates that the proposed approach essentially finds a discriminating subspace that can be spanned by a small number of vectors, and in this subspace different classes of data are linearly well separated. Experimental results over several classification benchmarks show that in most cases the proposed approach outperforms the state-of-art sparse learning algorithms.

ei

PDF DOI [BibTex]

PDF DOI [BibTex]


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Learning from Labeled and Unlabeled Data on a Directed Graph

Zhou, D., Huang, J., Schölkopf, B.

In Proceedings of the 22nd International Conference on Machine Learning, pages: 1041 -1048, (Editors: L De Raedt and S Wrobel), ACM, New York, NY, USA, ICML, August 2005 (inproceedings)

Abstract
We propose a general framework for learning from labeled and unlabeled data on a directed graph in which the structure of the graph including the directionality of the edges is considered. The time complexity of the algorithm derived from this framework is nearly linear due to recently developed numerical techniques. In the absence of labeled instances, this framework can be utilized as a spectral clustering method for directed graphs, which generalizes the spectral clustering approach for undirected graphs. We have applied our framework to real-world web classification problems and obtained encouraging results.

ei

PostScript PDF [BibTex]

PostScript PDF [BibTex]


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Regularization on Discrete Spaces

Zhou, D., Schölkopf, B.

In Pattern Recognition, Lecture Notes in Computer Science, Vol. 3663, pages: 361-368, (Editors: WG Kropatsch and R Sablatnig and A Hanbury), Springer, Berlin, Germany, 27th DAGM Symposium, August 2005 (inproceedings)

Abstract
We consider the classification problem on a finite set of objects. Some of them are labeled, and the task is to predict the labels of the remaining unlabeled ones. Such an estimation problem is generally referred to as transductive inference. It is well-known that many meaningful inductive or supervised methods can be derived from a regularization framework, which minimizes a loss function plus a regularization term. In the same spirit, we propose a general discrete regularization framework defined on finite object sets, which can be thought of as the discrete analogue of classical regularization theory. A family of transductive inference schemes is then systemically derived from the framework, including our earlier algorithm for transductive inference, with which we obtained encouraging results on many practical classification problems. The discrete regularization framework is built on the discrete analysis and geometry developed by ourselves, in which a number of discrete differential operators of various orders are constructed, which can be thought of as the discrete analogue of their counterparts in the continuous case.

ei

PDF PostScript DOI [BibTex]

PDF PostScript DOI [BibTex]


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Large Margin Non-Linear Embedding

Zien, A., Candela, J.

In ICML 2005, pages: 1065-1072, (Editors: De Raedt, L. , S. Wrobel), ACM Press, New York, NY, USA, 22nd International Conference on Machine Learning, August 2005 (inproceedings)

Abstract
It is common in classification methods to first place data in a vector space and then learn decision boundaries. We propose reversing that process: for fixed decision boundaries, we ``learn‘‘ the location of the data. This way we (i) do not need a metric (or even stronger structure) -- pairwise dissimilarities suffice; and additionally (ii) produce low-dimensional embeddings that can be analyzed visually. We achieve this by combining an entropy-based embedding method with an entropy-based version of semi-supervised logistic regression. We present results for clustering and semi-supervised classification.

ei

PDF PostScript Web DOI [BibTex]

PDF PostScript Web DOI [BibTex]


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Face Detection: Efficient and Rank Deficient

Kienzle, W., BakIr, G., Franz, M., Schölkopf, B.

In Advances in Neural Information Processing Systems 17, pages: 673-680, (Editors: LK Saul and Y Weiss and L Bottou), MIT Press, Cambridge, MA, USA, 18th Annual Conference on Neural Information Processing Systems (NIPS), July 2005 (inproceedings)

Abstract
This paper proposes a method for computing fast approximations to support vector decision functions in the field of object detection. In the present approach we are building on an existing algorithm where the set of support vectors is replaced by a smaller, so-called reduced set of synthesized input space points. In contrast to the existing method that finds the reduced set via unconstrained optimization, we impose a structural constraint on the synthetic points such that the resulting approximations can be evaluated via separable filters. For applications that require scanning an entire image, this decreases the computational complexity of a scan by a significant amount. We present experimental results on a standard face detection database.

ei

PDF Web [BibTex]

PDF Web [BibTex]


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Methods Towards Invasive Human Brain Computer Interfaces

Lal, T., Hinterberger, T., Widman, G., Schröder, M., Hill, J., Rosenstiel, W., Elger, C., Schölkopf, B., Birbaumer, N.

In Advances in Neural Information Processing Systems 17, pages: 737-744, (Editors: LK Saul and Y Weiss and L Bottou), MIT Press, Cambridge, MA, USA, 18th Annual Conference on Neural Information Processing Systems (NIPS), July 2005 (inproceedings)

Abstract
During the last ten years there has been growing interest in the development of Brain Computer Interfaces (BCIs). The field has mainly been driven by the needs of completely paralyzed patients to communicate. With a few exceptions, most human BCIs are based on extracranial electroencephalography (EEG). However, reported bit rates are still low. One reason for this is the low signal-to-noise ratio of the EEG. We are currently investigating if BCIs based on electrocorticography (ECoG) are a viable alternative. In this paper we present the method and examples of intracranial EEG recordings of three epilepsy patients with electrode grids placed on the motor cortex. The patients were asked to repeatedly imagine movements of two kinds, e.g., tongue or finger movements. We analyze the classifiability of the data using Support Vector Machines (SVMs) and Recursive Channel Elimination (RCE).

ei

PDF Web [BibTex]

PDF Web [BibTex]


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A Machine Learning Approach to Conjoint Analysis

Chapelle, O., Harchaoui, Z.

In Advances in Neural Information Processing Systems 17, pages: 257-264, (Editors: Saul, L.K. , Y. Weiss, L. Bottou), MIT Press, Cambridge, MA, USA, Eighteenth Annual Conference on Neural Information Processing Systems (NIPS), July 2005 (inproceedings)

Abstract
Choice-based conjoint analysis builds models of consumers preferences over products with answers gathered in questionnaires. Our main goal is to bring tools from the machine learning community to solve more efficiently this problem. Thus, we propose two algorithms to estimate quickly and accurately consumer preferences.

ei

PDF Web [BibTex]

PDF Web [BibTex]


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An Auditory Paradigm for Brain-Computer Interfaces

Hill, N., Lal, T., Bierig, K., Birbaumer, N., Schölkopf, B.

In Advances in Neural Information Processing Systems 17, pages: 569-576, (Editors: LK Saul and Y Weiss and L Bottou), MIT Press, Cambridge, MA, USA, 18th Annual Conference on Neural Information Processing Systems (NIPS), July 2005 (inproceedings)

Abstract
Motivated by the particular problems involved in communicating with "locked-in" paralysed patients, we aim to develop a brain-computer interface that uses auditory stimuli. We describe a paradigm that allows a user to make a binary decision by focusing attention on one of two concurrent auditory stimulus sequences. Using Support Vector Machine classification and Recursive Channel Elimination on the independent components of averaged event-related potentials, we show that an untrained user's EEG data can be classified with an encouragingly high level of accuracy. This suggests that it is possible for users to modulate EEG signals in a single trial by the conscious direction of attention, well enough to be useful in BCI.

ei

PDF Web [BibTex]

PDF Web [BibTex]


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Matrix Exponential Gradient Updates for On-line Learning and Bregman Projection

Tsuda, K., Rätsch, G., Warmuth, M.

In Advances in Neural Information Processing Systems 17, pages: 1425-1432, (Editors: Saul, L.K. , Y. Weiss, L. Bottou), MIT Press, Cambridge, MA, USA, Eighteenth Annual Conference on Neural Information Processing Systems (NIPS), July 2005 (inproceedings)

Abstract
We address the problem of learning a symmetric positive definite matrix. The central issue is to design parameter updates that preserve positive definiteness. Our updates are motivated with the von Neumann divergence. Rather than treating the most general case, we focus on two key applications that exemplify our methods: On-line learning with a simple square loss and finding a symmetric positive definite matrix subject to symmetric linear constraints. The updates generalize the Exponentiated Gradient (EG) update and AdaBoost, respectively: the parameter is now a symmetric positive definite matrix of trace one instead of a probability vector (which in this context is a diagonal positive definite matrix with trace one). The generalized updates use matrix logarithms and exponentials to preserve positive definiteness. Most importantly, we show how the analysis of each algorithm generalizes to the non-diagonal case. We apply both new algorithms, called the Matrix Exponentiated Gradient (MEG) update and DefiniteBoost, to learn a kernel matrix from distance measurements.

ei

PDF Web [BibTex]

PDF Web [BibTex]


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Machine Learning Applied to Perception: Decision Images for Classification

Wichmann, F., Graf, A., Simoncelli, E., Bülthoff, H., Schölkopf, B.

In Advances in Neural Information Processing Systems 17, pages: 1489-1496, (Editors: LK, Saul and Y, Weiss and L, Bottou), MIT Press, Cambridge, MA, USA, 18th Annual Conference on Neural Information Processing Systems (NIPS), July 2005 (inproceedings)

Abstract
We study gender discrimination of human faces using a combination of psychophysical classification and discrimination experiments together with methods from machine learning. We reduce the dimensionality of a set of face images using principal component analysis, and then train a set of linear classifiers on this reduced representation (linear support vector machines (SVMs), relevance vector machines (RVMs), Fisher linear discriminant (FLD), and prototype (prot) classifiers) using human classification data. Because we combine a linear preprocessor with linear classifiers, the entire system acts as a linear classifier, allowing us to visualise the decision-image corresponding to the normal vector of the separating hyperplanes (SH) of each classifier. We predict that the female-to-maleness transition along the normal vector for classifiers closely mimicking human classification (SVM and RVM 1) should be faster than the transition along any other direction. A psychophysical discrimination experiment using the decision images as stimuli is consistent with this prediction.

ei

PDF Web [BibTex]

PDF Web [BibTex]


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Learning the Kernel with Hyperkernels

Ong, CS., Smola, A., Williamson, R.

Journal of Machine Learning Research, 6, pages: 1043-1071, July 2005 (article)

Abstract
This paper addresses the problem of choosing a kernel suitable for estimation with a Support Vector Machine, hence further automating machine learning. This goal is achieved by defining a Reproducing Kernel Hilbert Space on the space of kernels itself. Such a formulation leads to a statistical estimation problem similar to the problem of minimizing a regularized risk functional. We state the equivalent representer theorem for the choice of kernels and present a semidefinite programming formulation of the resulting optimization problem. Several recipes for constructing hyperkernels are provided, as well as the details of common machine learning problems. Experimental results for classification, regression and novelty detection on UCI data show the feasibility of our approach.

ei

PDF [BibTex]

PDF [BibTex]


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Breaking SVM Complexity with Cross-Training

Bakir, G., Bottou, L., Weston, J.

In Advances in Neural Information Processing Systems 17, pages: 81-88, (Editors: Saul, L.K. , Y. Weiss, L. Bottou), MIT Press, Cambridge, MA, USA, Eighteenth Annual Conference on Neural Information Processing Systems (NIPS), July 2005 (inproceedings)

Abstract
We propose an algorithm for selectively removing examples from the training set using probabilistic estimates related to editing algorithms (Devijver and Kittler82). The procedure creates a separable distribution of training examples with minimal impact on the decision boundary position. It breaks the linear dependency between the number of SVs and the number of training examples, and sharply reduces the complexity of SVMs during both the training and prediction stages.

ei

PDF Web [BibTex]

PDF Web [BibTex]


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Implicit Wiener series for higher-order image analysis

Franz, M., Schölkopf, B.

In Advances in Neural Information Processing Systems 17, pages: 465-472, (Editors: LK Saul and Y Weiss and L Bottou), MIT Press, Cambridge, MA, USA, 18th Annual Conference on Neural Information Processing Systems (NIPS), July 2005 (inproceedings)

Abstract
The computation of classical higher-order statistics such as higher-order moments or spectra is difficult for images due to the huge number of terms to be estimated and interpreted. We propose an alternative approach in which multiplicative pixel interactions are described by a series of Wiener functionals. Since the functionals are estimated implicitly via polynomial kernels, the combinatorial explosion associated with the classical higher-order statistics is avoided. First results show that image structures such as lines or corners can be predicted correctly, and that pixel interactions up to the order of five play an important role in natural images.

ei

PDF Web [BibTex]

PDF Web [BibTex]


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Limits of Spectral Clustering

von Luxburg, U., Bousquet, O., Belkin, M.

In Advances in Neural Information Processing Systems 17, pages: 857-864, (Editors: Saul, L. K., Y. Weiss, L. Bottou), MIT Press, Cambridge, MA, USA, Eighteenth Annual Conference on Neural Information Processing Systems (NIPS), July 2005 (inproceedings)

Abstract
An important aspect of clustering algorithms is whether the partitions constructed on finite samples converge to a useful clustering of the whole data space as the sample size increases. This paper investigates this question for normalized and unnormalized versions of the popular spectral clustering algorithm. Surprisingly, the convergence of unnormalized spectral clustering is more difficult to handle than the normalized case. Even though recently some first results on the convergence of normalized spectral clustering have been obtained, for the unnormalized case we have to develop a completely new approach combining tools from numerical integration, spectral and perturbation theory, and probability. It turns out that while in the normalized case, spectral clustering usually converges to a nice partition of the data space, in the unnormalized case the same only holds under strong additional assumptions which are not always satisfied. We conclude that our analysis gives strong evidence for the superiority of normalized spectral clustering. It also provides a basis for future exploration of other Laplacian-based methods.

ei

PDF Web [BibTex]

PDF Web [BibTex]


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Semi-supervised Learning on Directed Graphs

Zhou, D., Schölkopf, B., Hofmann, T.

In Advances in Neural Information Processing Systems 17, pages: 1633-1640, (Editors: LK Saul and Y Weiss and L Bottou), MIT Press, Cambridge, MA, USA, 18th Annual Conference on Neural Information Processing Systems (NIPS), July 2005 (inproceedings)

Abstract
Given a directed graph in which some of the nodes are labeled, we investigate the question of how to exploit the link structure of the graph to infer the labels of the remaining unlabeled nodes. To that extent we propose a regularization framework for functions defined over nodes of a directed graph that forces the classification function to change slowly on densely linked subgraphs. A powerful, yet computationally simple classification algorithm is derived within the proposed framework. The experimental evaluation on real-world Web classification problems demonstrates encouraging results that validate our approach.

ei

PDF Web [BibTex]

PDF Web [BibTex]


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Splines with non positive kernels

Canu, S., Ong, CS., Mary, X.

In 5th International ISAAC Congress, pages: 1-10, (Editors: Begehr, H. G.W., F. Nicolosi), World Scientific, Singapore, 5th International ISAAC Congress, July 2005 (inproceedings)

Abstract
Non parametric regressions methods can be presented in two main clusters. The one of smoothing splines methods requiring positive kernels and the other one known as Nonparametric Kernel Regression allowing the use of non positive kernels such as the Epanechnikov kernel. We propose a generalization of the smoothing spline method to include kernels which are still symmetric but not positive semi definite (they are called indefinite). The general relationship between smoothing spline, Reproducing Kernel Hilbert Spaces and positive kernels no longer exists with indefinite kernel. Instead they are associated with functional spaces called Reproducing Kernel Krein Spaces (RKKS) embedded with an indefinite inner product and thus not directly associated with a norm. Smothing splines in RKKS have many of the interesting properties of splines in RKHS, such as orthogon ality, projection, representer theorem and generalization bounds. We show that smoothing splines can be defined in RKKS as the regularized solution of the interpolation problem. Since no norm is available in a RKKS, Tikhonov regularization cannot be defined. Instead, we proposed to use iterative methods of conjugate gradient type with early stopping as regularization mechanism. Several iterative algorithms were collected which can be used to solve the optimization problems associated with learning in indefinite spaces. Some preliminary experiments with indefinite kernels for spline smoothing are reported revealing the computational efficiency of the approach.

ei

PDF Web [BibTex]

PDF Web [BibTex]


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Kernel Methods for Implicit Surface Modeling

Schölkopf, B., Giesen, J., Spalinger, S.

In Advances in Neural Information Processing Systems 17, pages: 1193-1200, (Editors: LK Saul and Y Weiss and L Bottou), MIT Press, Cambridge, MA, USA, 18th Annual Conference on Neural Information Processing Systems (NIPS), July 2005 (inproceedings)

Abstract
We describe methods for computing an implicit model of a hypersurface that is given only by a finite sampling. The methods work by mapping the sample points into a reproducing kernel Hilbert space and then determining regions in terms of hyperplanes.

ei

PDF Web [BibTex]

PDF Web [BibTex]


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Image Reconstruction by Linear Programming

Tsuda, K., Rätsch, G.

IEEE Transactions on Image Processing, 14(6):737-744, June 2005 (article)

Abstract
One way of image denoising is to project a noisy image to the subspace of admissible images derived, for instance, by PCA. However, a major drawback of this method is that all pixels are updated by the projection, even when only a few pixels are corrupted by noise or occlusion. We propose a new method to identify the noisy pixels by l1-norm penalization and to update the identified pixels only. The identification and updating of noisy pixels are formulated as one linear program which can be efficiently solved. In particular, one can apply the upsilon trick to directly specify the fraction of pixels to be reconstructed. Moreover, we extend the linear program to be able to exploit prior knowledge that occlusions often appear in contiguous blocks (e.g., sunglasses on faces). The basic idea is to penalize boundary points and interior points of the occluded area differently. We are also able to show the upsilon property for this extended LP leading to a method which is easy to use. Experimental results demonstrate the power of our approach.

ei

PDF DOI [BibTex]

PDF DOI [BibTex]


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RASE: recognition of alternatively spliced exons in C.elegans

Rätsch, G., Sonnenburg, S., Schölkopf, B.

Bioinformatics, 21(Suppl. 1):i369-i377, June 2005 (article)

ei

PDF Web DOI [BibTex]

PDF Web DOI [BibTex]


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Matrix Exponentiated Gradient Updates for On-line Learning and Bregman Projection

Tsuda, K., Rätsch, G., Warmuth, M.

Journal of Machine Learning Research, 6, pages: 995-1018, June 2005 (article)

Abstract
We address the problem of learning a symmetric positive definite matrix. The central issue is to design parameter updates that preserve positive definiteness. Our updates are motivated with the von Neumann divergence. Rather than treating the most general case, we focus on two key applications that exemplify our methods: on-line learning with a simple square loss, and finding a symmetric positive definite matrix subject to linear constraints. The updates generalize the exponentiated gradient (EG) update and AdaBoost, respectively: the parameter is now a symmetric positive definite matrix of trace one instead of a probability vector (which in this context is a diagonal positive definite matrix with trace one). The generalized updates use matrix logarithms and exponentials to preserve positive definiteness. Most importantly, we show how the derivation and the analyses of the original EG update and AdaBoost generalize to the non-diagonal case. We apply the resulting matrix exponentiated gradient (MEG) update and DefiniteBoost to the problem of learning a kernel matrix from distance measurements.

ei

PDF [BibTex]

PDF [BibTex]


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Texture and haptic cues in slant discrimination: Reliability-based cue weighting without statistically optimal cue combination

Rosas, P., Wagemans, J., Ernst, M., Wichmann, F.

Journal of the Optical Society of America A, 22(5):801-809, May 2005 (article)

Abstract
A number of models of depth cue combination suggest that the final depth percept results from a weighted average of independent depth estimates based on the different cues available. The weight of each cue in such an average is thought to depend on the reliability of each cue. In principle, such a depth estimation could be statistically optimal in the sense of producing the minimum variance unbiased estimator that can be constructed from the available information. Here we test such models using visual and haptic depth information. Different texture types produce differences in slant discrimination performance, providing a means for testing a reliability-sensitive cue combination model using texture as one of the cues to slant. Our results show that the weights for the cues were generally sensitive to their reliability, but fell short of statistically optimal combination—we find reliability-based re-weighting, but not statistically optimal cue combination.

ei

PDF Web [BibTex]

PDF Web [BibTex]


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Efficient Adaptive Sampling of the Psychometric Function by Maximizing Information Gain

Tanner, TG.

Biologische Kybernetik, Eberhard-Karls University Tübingen, Tübingen, Germany, May 2005 (diplomathesis)

Abstract
A common task in psychophysics is to measure the psychometric function. A psychometric function can be described by its shape and four parameters: offset or threshold, slope or width, false alarm rate or chance level and miss or lapse rate. Depending on the parameters of interest some points on the psychometric function may be more informative than others. Adaptive methods attempt to place trials on the most informative points based on the data collected in previous trials. A new Bayesian adaptive psychometric method placing trials by minimising the expected entropy of the posterior probabilty dis- tribution over a set of possible stimuli is introduced. The method is more flexible, faster and at least as efficient as the established method (Kontsevich and Tyler, 1999). Comparably accurate (2dB) threshold and slope estimates can be obtained after about 30 and 500 trials, respectively. By using a dynamic termination criterion the efficiency can be further improved. The method can be applied to all experimental designs including yes/no designs and allows acquisition of any set of free parameters. By weighting the importance of parameters one can include nuisance parameters and adjust the relative expected errors. Use of nuisance parameters may lead to more accurate estimates than assuming a guessed fixed value. Block designs are supported and do not harm the performance if a sufficient number of trials are performed. The method was evaluated by computer simulations in which the role of parametric assumptions, its robustness, the quality of different point estimates, the effect of dynamic termination criteria and many other settings were investigated.

ei

[BibTex]

[BibTex]


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Bayesian inference for psychometric functions

Kuss, M., Jäkel, F., Wichmann, F.

Journal of Vision, 5(5):478-492, May 2005 (article)

Abstract
In psychophysical studies, the psychometric function is used to model the relation between physical stimulus intensity and the observer’s ability to detect or discriminate between stimuli of different intensities. In this study, we propose the use of Bayesian inference to extract the information contained in experimental data to estimate the parameters of psychometric functions. Because Bayesian inference cannot be performed analytically, we describe how a Markov chain Monte Carlo method can be used to generate samples from the posterior distribution over parameters. These samples are used to estimate Bayesian confidence intervals and other characteristics of the posterior distribution. In addition, we discuss the parameterization of psychometric functions and the role of prior distributions in the analysis. The proposed approach is exemplified using artificially generated data and in a case study for real experimental data. Furthermore, we compare our approach with traditional methods based on maximum likelihood parameter estimation combined with bootstrap techniques for confidence interval estimation and find the Bayesian approach to be superior.

ei

PDF PDF DOI [BibTex]

PDF PDF DOI [BibTex]


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A gene expression map of Arabidopsis thaliana development

Schmid, M., Davison, T., Henz, S., Pape, U., Demar, M., Vingron, M., Schölkopf, B., Weigel, D., Lohmann, J.

Nature Genetics, 37(5):501-506, April 2005 (article)

Abstract
Regulatory regions of plant genes tend to be more compact than those of animal genes, but the complement of transcription factors encoded in plant genomes is as large or larger than that found in those of animals. Plants therefore provide an opportunity to study how transcriptional programs control multicellular development. We analyzed global gene expression during development of the reference plant Arabidopsis thaliana in samples covering many stages, from embryogenesis to senescence, and diverse organs. Here, we provide a first analysis of this data set, which is part of the AtGenExpress expression atlas. We observed that the expression levels of transcription factor genes and signal transduction components are similar to those of metabolic genes. Examining the expression patterns of large gene families, we found that they are often more similar than would be expected by chance, indicating that many gene families have been co-opted for specific developmental processes.

ei

PDF DOI [BibTex]

PDF DOI [BibTex]


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Experimentally optimal v in support vector regression for different noise models and parameter settings

Chalimourda, A., Schölkopf, B., Smola, A.

Neural Networks, 18(2):205-205, March 2005 (article)

ei

PDF DOI [BibTex]

PDF DOI [BibTex]


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Adhesive microstructure and method of forming same

Fearing, R. S., Sitti, M.

March 2005, US Patent 6,872,439 (misc)

pi

[BibTex]

[BibTex]


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Active Learning for Parzen Window Classifier

Chapelle, O.

In AISTATS 2005, pages: 49-56, (Editors: Cowell, R. , Z. Ghahramani), Tenth International Workshop on Artificial Intelligence and Statistics (AI & Statistics), January 2005 (inproceedings)

Abstract
The problem of active learning is approached in this paper by minimizing directly an estimate of the expected test error. The main difficulty in this ``optimal'' strategy is that output probabilities need to be estimated accurately. We suggest here different methods for estimating those efficiently. In this context, the Parzen window classifier is considered because it is both simple and probabilistic. The analysis of experimental results highlights that regularization is a key ingredient for this strategy.

ei

Web [BibTex]

Web [BibTex]


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Semi-Supervised Classification by Low Density Separation

Chapelle, O., Zien, A.

In AISTATS 2005, pages: 57-64, (Editors: Cowell, R. , Z. Ghahramani), Tenth International Workshop on Artificial Intelligence and Statistics (AI & Statistics), January 2005 (inproceedings)

Abstract
We believe that the cluster assumption is key to successful semi-supervised learning. Based on this, we propose three semi-supervised algorithms: 1. deriving graph-based distances that emphazise low density regions between clusters, followed by training a standard SVM; 2. optimizing the Transductive SVM objective function, which places the decision boundary in low density regions, by gradient descent; 3. combining the first two to make maximum use of the cluster assumption. We compare with state of the art algorithms and demonstrate superior accuracy for the latter two methods.

ei

PDF Web [BibTex]

PDF Web [BibTex]


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Kernel Constrained Covariance for Dependence Measurement

Gretton, A., Smola, A., Bousquet, O., Herbrich, R., Belitski, A., Augath, M., Murayama, Y., Pauls, J., Schölkopf, B., Logothetis, N.

In Proceedings of the 10th International Workshop on Artificial Intelligence and Statistics, pages: 112-119, (Editors: R Cowell, R and Z Ghahramani), AISTATS, January 2005 (inproceedings)

Abstract
We discuss reproducing kernel Hilbert space (RKHS)-based measures of statistical dependence, with emphasis on constrained covariance (COCO), a novel criterion to test dependence of random variables. We show that COCO is a test for independence if and only if the associated RKHSs are universal. That said, no independence test exists that can distinguish dependent and independent random variables in all circumstances. Dependent random variables can result in a COCO which is arbitrarily close to zero when the source densities are highly non-smooth. All current kernel-based independence tests share this behaviour. We demonstrate exponential convergence between the population and empirical COCO. Finally, we use COCO as a measure of joint neural activity between voxels in MRI recordings of the macaque monkey, and compare the results to the mutual information and the correlation. We also show the effect of removing breathing artefacts from the MRI recording.

ei

PDF Web [BibTex]

PDF Web [BibTex]


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Hilbertian Metrics and Positive Definite Kernels on Probability Measures

Hein, M., Bousquet, O.

In AISTATS 2005, pages: 136-143, (Editors: Cowell, R. , Z. Ghahramani), Tenth International Workshop on Artificial Intelligence and Statistics (AI & Statistics), January 2005 (inproceedings)

Abstract
We investigate the problem of defining Hilbertian metrics resp. positive definite kernels on probability measures, continuing previous work. This type of kernels has shown very good results in text classification and has a wide range of possible applications. In this paper we extend the two-parameter family of Hilbertian metrics of Topsoe such that it now includes all commonly used Hilbertian metrics on probability measures. This allows us to do model selection among these metrics in an elegant and unified way. Second we investigate further our approach to incorporate similarity information of the probability space into the kernel. The analysis provides a better understanding of these kernels and gives in some cases a more efficient way to compute them. Finally we compare all proposed kernels in two text and two image classification problems.

ei

PDF Web [BibTex]

PDF Web [BibTex]


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Composite adaptive control with locally weighted statistical learning

Nakanishi, J., Farrell, J. A., Schaal, S.

Neural Networks, 18(1):71-90, January 2005, clmc (article)

Abstract
This paper introduces a provably stable learning adaptive control framework with statistical learning. The proposed algorithm employs nonlinear function approximation with automatic growth of the learning network according to the nonlinearities and the working domain of the control system. The unknown function in the dynamical system is approximated by piecewise linear models using a nonparametric regression technique. Local models are allocated as necessary and their parameters are optimized on-line. Inspired by composite adaptive control methods, the proposed learning adaptive control algorithm uses both the tracking error and the estimation error to update the parameters. We first discuss statistical learning of nonlinear functions, and motivate our choice of the locally weighted learning framework. Second, we begin with a class of first order SISO systems for theoretical development of our learning adaptive control framework, and present a stability proof including a parameter projection method that is needed to avoid potential singularities during adaptation. Then, we generalize our adaptive controller to higher order SISO systems, and discuss further extension to MIMO problems. Finally, we evaluate our theoretical control framework in numerical simulations to illustrate the effectiveness of the proposed learning adaptive controller for rapid convergence and high accuracy of control.

am

link (url) [BibTex]

link (url) [BibTex]